Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63040 318 / 5e-107 unknown protein AT1G48460 158 / 3e-45 unknown protein AT3G60590 70 / 3e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027687 [exp] 613 / 0 AT5G63040 321 / 6e-108 unknown protein Lus10032738 [exp] 108 / 3e-26 AT1G48460 246 / 2e-79 unknown protein Lus10015886 [exp] 68 / 4e-12 AT4G00060 669 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088700 [exp] 447 / 1e-157 AT5G63040 344 / 4e-117 unknown protein Potri.014G038800 [exp] 153 / 6e-43 AT1G48460 343 / 2e-117 unknown protein Potri.014G061000 [exp] 62 / 1e-10 AT3G60590 382 / 9e-132 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039957 pacid=23173459 polypeptide=Lus10039957 locus=Lus10039957.g ID=Lus10039957.BGIv1.0 annot-version=v1.0 ATGGCTGTTAGAGCTGGTCCAGCGGCAGTATCTTGTGCCGCTTCGTCCCTTTCTTCTTCTCTTAAGCTGCAGAGAAGCTCCAAGCTAAGCTTAAGAGATG GACCGTCTGGTAGCCTGCAGTTTGGAATTCGGAAGTCCGAGATTGCAATAGTCAAATTGGGCACTTCCACGTGTGGTCGGCTGCAAAGCGATAGAAAGCT TCACATGAGACCAAATTTGATCTCTGCAATTTCTCAGGACCAATCACAGTACAGTGAGCTTAACCCTGATGTGCCAGAACAGGAAGATTCTCCTTCTAAT CCTGATTCTATCTCCACCCTTAGCAGTTCATTCAGCGACACTCATGGAGTGGGTGGAAAACCTGGTTTTTTATTATTCTATAGTCATCCATATGAAACAA AAGACGAAATTGCTGCATATCCTGTACAGAACAATAAGAGCAACCTATTGTGGTTCCTTGGTCCAGCTGTCCTTGTGGCGTCTTTCATCTTCCCTTCCAT TTATTTGCGCAAAATACTCTCTCTGATATTTGAGGACTCTTTGCTCACAGATTTCCTCATCCTATTCTTCACGGAAGCAATCTTCTACGGTGGGGTTGCC ATTTTCCTTCTTTTGATAGACCATTTGAAAAGGCCCGATGAAACAGAAGCTACTCCAAGCAACGAAATCACACCATCTCCTCAGTTGGGCCAGAGAATAT CTTCTGTTGCTACATTGGTTCTCAGTCTTATAGTTCCTATGGTTACTATGGGATTCGTCTGGCCATGGACTGGCCCTGCTGCTTCTGCCACTCTTGCTCC GTATCTGGTTGGCATTGTCGTTCAATTTGCATTTGAGCAATATGCGAGATCTCGAAAATCACCTTCGTGGCCAGTCATCCCTATCATTTTTCAGGTTTAC CGACTGCACCAACTGAATCGAGCAGCTCAACTGGTGACAGCACTGTCATACACAGTCAAAGGAGCTGAAATGACGACGCATAACCTGGAGATAAGCAGCT CCCTGGGCACACTTTTGAATGTCCTGCGATTCCTGGGAGTCATCTGCATCTGGTCTCTATCAAGCTTCCTCATGAAGTTTTTCCCATCAAACACCAGGAG GGTGACACCGTGA
AA sequence Show only first row Show all	>Lus10039957 pacid=23173459 polypeptide=Lus10039957 locus=Lus10039957.g ID=Lus10039957.BGIv1.0 annot-version=v1.0 MAVRAGPAAVSCAASSLSSSLKLQRSSKLSLRDGPSGSLQFGIRKSEIAIVKLGTSTCGRLQSDRKLHMRPNLISAISQDQSQYSELNPDVPEQEDSPSN PDSISTLSSSFSDTHGVGGKPGFLLFYSHPYETKDEIAAYPVQNNKSNLLWFLGPAVLVASFIFPSIYLRKILSLIFEDSLLTDFLILFFTEAIFYGGVA IFLLLIDHLKRPDETEATPSNEITPSPQLGQRISSVATLVLSLIVPMVTMGFVWPWTGPAASATLAPYLVGIVVQFAFEQYARSRKSPSWPVIPIIFQVY RLHQLNRAAQLVTALSYTVKGAEMTTHNLEISSSLGTLLNVLRFLGVICIWSLSSFLMKFFPSNTRRVTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63040			unknown protein		Lus10039957 [exp]	0	1
AT5G10070			RNase L inhibitor protein-rela...		Lus10002091 [exp]	7.7	0.8283
AT1G31500			DNAse I-like superfamily prote...		Lus10042463 [exp]	10.6	0.7934
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	10.9	0.8160
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	12.1	0.7964
AT5G45780			Leucine-rich repeat protein ki...		Lus10029241 [exp]	12.4	0.7770
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10022969 [exp]	13.2	0.7567
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	15.4	0.7739
AT1G03180			unknown protein		Lus10000654 [exp]	17.7	0.7810
AT3G07180			GPI transamidase component PIG...		Lus10022779 [exp]	21.8	0.7753
AT1G56310			Polynucleotidyl transferase, r...		Lus10031404 [exp]	23.9	0.7491

Compare expression of checked genes

Lus10039957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.