Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44700 126 / 2e-31 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 122 / 5e-30 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 107 / 4e-25 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 106 / 1e-24 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 104 / 6e-24 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G35710 103 / 7e-24 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G07180 103 / 8e-24 ERL2 ERECTA-like 2 (.1) AT5G56040 102 / 2e-23 Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G12610 100 / 2e-23 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT1G08590 102 / 3e-23 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027688 [exp] 391 / 1e-127 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10036251 [exp] 116 / 7e-28 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10031161 [exp] 116 / 8e-28 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031377 [exp] 111 / 3e-27 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10030634 [exp] 112 / 1e-26 AT3G47570 755 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 111 / 2e-26 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10008712 [exp] 111 / 3e-26 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10014500 [exp] 111 / 3e-26 AT3G47570 663 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016896 [exp] 110 / 7e-26 AT3G47570 714 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088900 [exp] 218 / 4e-63 AT4G20140 700 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G156200 [exp] 124 / 1e-30 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 121 / 2e-29 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.014G195200 [exp] 109 / 1e-25 AT1G35710 715 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G099200 [exp] 107 / 6e-25 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.009G064300 [exp] 104 / 6e-25 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.011G139700 [exp] 104 / 4e-24 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.017G151400 [exp] 104 / 5e-24 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G123800 [exp] 102 / 2e-23 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G022800 [exp] 101 / 6e-23 AT1G73080 582 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10039958 pacid=23173492 polypeptide=Lus10039958 locus=Lus10039958.g ID=Lus10039958.BGIv1.0 annot-version=v1.0 ATGCGTCCGATGAAGGTTGTTAGGAGTATCGAGATTCGTCATTACACGGTCCACTGGGACCCGTCATATGATAGTGTATGGTCGGATCCGAACCACATCA GACTTCATCAACTTGACCTTATGTTTCAGAGTGTAGCGGACGAGGGCGCTTTAGCTCCAGGGTACATGGAGTGGTATCTCACGCACACCCACCCGCGCAT TTGTAGACTGATCGAGACCCATGTAGATGTTCCGTCCGAGATAATACCTTCCTCAGTTGGAAACACCAGGTTGGAGAATCTCTATCTGTTTGATAATTTA ATCACAGGAAGACTCCCTCCGGAAATCCAGAGGCTACAGAGGCTTACCAACATTTATCTCTACGATAACCAGATGTCAGGTGATATTCCAAGGGAGCTGA CAACCTGCGCAAAGTTGACTGAAATCGATTTCTTTGAACAAGAACCAGTCAGGGAACATCCCTTTAACAATAAAGACTGCAAGAAGCTATTCGAGCTGAG GCTGTCCGAGAACAACCTGACAGGTTCAATTCCAGCAGAGCTTGGACAGCTGACAGAGCTGCAAGTGATCTTGGATCTCAGCTATAATTCTTTCTCCGGA AAGATTCCGTTGTCGCTCGGAAACCTGGTCAAGCTGGAAAGGTTGAATCTTTCGACTAATCAGCTTCAGGGAGAAATACCCAGTTCGCTTATAAAGCTCA CCAGTCTCCACAGGCTTAACCTGTCAAATAACAACCTCCAGGGACGAATTCCTGACGAGTTTTCAGGATTCCCAACTGGGTCTTTTCTTGGGAATGAGGA GAATCTATTTGGTCGGCCATTGGAGAATTTCTGCTCGGGAGAATCAGGTAGGGAAAATAAGAAGCTGTCGAATGGTGTTGTGGTGGGTATAATCTTTGTG ATCGTCTTCTCGTCGACAGTTGTATGCATGTTGATGATATATGTAATGATGAAAATGTGGTGCCATTGGAGGGAAGTCTCAATATCTACCATGGATGGTC GTGGTGGAAATTATCAGAGGAGACAAGTGAAAGAGAGGAAAGGTAATAATAATGGCGATCATGATCAATTCTGGAGGATGGGTTCTGCTGCAAGAATGGT GGCTGCACAAACATGTATGTTCCATTTCAAAATAGAACGTGAAGCAGCAGAAGAAATATCCATTGCTTGA
AA sequence Show only first row Show all	>Lus10039958 pacid=23173492 polypeptide=Lus10039958 locus=Lus10039958.g ID=Lus10039958.BGIv1.0 annot-version=v1.0 MRPMKVVRSIEIRHYTVHWDPSYDSVWSDPNHIRLHQLDLMFQSVADEGALAPGYMEWYLTHTHPRICRLIETHVDVPSEIIPSSVGNTRLENLYLFDNL ITGRLPPEIQRLQRLTNIYLYDNQMSGDIPRELTTCAKLTEIDFFEQEPVREHPFNNKDCKKLFELRLSENNLTGSIPAELGQLTELQVILDLSYNSFSG KIPLSLGNLVKLERLNLSTNQLQGEIPSSLIKLTSLHRLNLSNNNLQGRIPDEFSGFPTGSFLGNEENLFGRPLENFCSGESGRENKKLSNGVVVGIIFV IVFSSTVVCMLMIYVMMKMWCHWREVSISTMDGRGGNYQRRQVKERKGNNNGDHDQFWRMGSAARMVAAQTCMFHFKIEREAAEEISIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44700		GSO2, EDA23	GASSHO 2, EMBRYO SAC DEVELOPME...		Lus10039958 [exp]	0	1
AT5G06990			Protein of unknown function, D...		Lus10008672 [exp]	4.7	0.6771
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004984 [exp]	9.4	0.7235
AT2G27080			Late embryogenesis abundant (L...		Lus10025548 [exp]	18.4	0.6631
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	32.1	0.6969
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10020272 [exp]	37.9	0.6956
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	40.2	0.6612
AT1G73050			Glucose-methanol-choline (GMC)...		Lus10033390 [exp]	41.7	0.5566
AT3G19950			RING/U-box superfamily protein...		Lus10033682 [exp]	44.3	0.6700
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	61.6	0.6651
AT2G43570		CHI	"chitinase, putative", chitina...		Lus10014253 [exp]	61.8	0.5754

Compare expression of checked genes

Lus10039958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.