Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19100 627 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36280 461 / 2e-155 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36290 449 / 2e-150 CRT1 compromised recognition of TCV 1 (.1) AT4G24970 425 / 4e-140 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G50780 428 / 5e-140 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G13130 402 / 2e-131 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1.2) AT4G36270 306 / 5e-97 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042100 [exp] 777 / 0 AT1G19100 667 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10001240 [exp] 620 / 0 AT1G19100 532 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10014276 [exp] 432 / 2e-144 AT4G36290 697 / 0.0 compromised recognition of TCV 1 (.1) Lus10041578 [exp] 414 / 1e-135 AT4G24970 662 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10016745 [exp] 396 / 1e-128 AT4G24970 707 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10022438 [exp] 390 / 2e-126 AT4G24970 736 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10025978 [exp] 316 / 6e-101 AT4G36280 487 / 7e-168 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10027689 [exp] 55 / 1e-08 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089000 [exp] 667 / 0 AT1G19100 741 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G079400 [exp] 667 / 0 AT1G19100 706 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.005G118400 [exp] 440 / 2e-146 AT4G36290 706 / 0.0 compromised recognition of TCV 1 (.1) Potri.012G102800 [exp] 419 / 2e-136 AT5G50780 769 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.003G167201 [exp] 417 / 7e-136 AT4G24970 671 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G100900 [exp] 413 / 5e-134 AT4G24970 773 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.011G144500 [exp] 108 / 2e-24 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10039959 pacid=23173463 polypeptide=Lus10039959 locus=Lus10039959.g ID=Lus10039959.BGIv1.0 annot-version=v1.0 ATGAGAGTTGTTACATATGTGCCTGTGACGTTAGAATCACAAGGAAAATTTAGCCAGACAGTCCAACGGATTGACCATCAGGAGTACACGACCCAGTCTA GGAGACAAGAGCCCGAGAAGAATAGTTGTGCAGATATCTTCCGTACTCCCCGACCTGGTTCTCGTATATTGTTGCAGGAACAGTCTCCTGTGAATGATGT AGACATTTGTTCTACCTCAACCTTGCCTTCAGCACCTATTTGTCGTCAGTTTTGGAAGGCTGGAAGCTACAGCAATGTGAATTGCTCCAAAGCTACGCTT CAAAATGGAAAAAACCACATCCATGTACACCCTGGGTTTCTTCATTCCAATGCCACTTCACATAAGTGGGTGTTTGGTGCGATTGCAGAAATGCTTGATA ATGCAGTTGATGAGATAAAGAATGGCGCAACTTATGTAATTGTAGATAAAGTCTCGAATCCAAGAGATGGAGGTTCAGCGTTGTTGATCCAAGATGATGG CGGGGGAATGGATCCTCAAGCAATCCGGCAATGTTTGAGTTTTGGTTTTTCTGAAAAGAAGTTCTCAGGAGCCATCGGGCAGTATGGTAATGGCTTCAAA ACCAGCACCATGAGACTCGGAGCTGATGCTATTATCTTCACTCGCCATATTAAGGATTGGAGAGCAACTCAAAGCATTGGTCTCCTCTCCTATTCATTTT TGATGCATATGGGGCATGACCGGATAATAGTTCCAATAGTAGATTATGAGTTTAATACAGAAACCAACCAGTTGGAAATCTCAAGTCTGCAAACCAAGGA ATCTTTTGACGCTAATCTTTCGCTATTGATGCAGTGGTCCCCATATTCTACCGAAACAGAGCTTCTGAAGCAGTTTGATGATGTTGGACTACATGGAACA AAGGTTGTGATCTATAACTTGTGGTACGACAATGATGGGAACTTGGAGTTGGACTTTGACACAGATCTTCAGGACATTCGTATTGAAGGATGTACCAGAG AAGTTAGGAAAGTAAATGACCAGCACCTTGCTAATCGTTTACATTACTCTCTTCATGCATATTTGTCCATCTTGTACCTCCAGGTTCCTGATGCTTTCAG TATGATATTGCGTGGTCAAGTTGTCAAGCCTTATAATCTTGCTGATGACCTCAAATTTCAAGAATATATCTTGTATAAACCTAAAGTTGGTGCATCAACA CTTTTGCAGAAAGTCATAACTACAATTGGGTTTGTAAAAGATGCTCCTCGTGTTAGTATCCATGGCTTCAATATTTACCATAAGAATCGTCTAATAAAGC CTTTTATGAAAGTTGTGGACTGTACCAACAGTAGCGGCAGAGGAGTGGTTGGTATTCTAGAAGCAAACTTCATGGAGCCTACACATAACAAGCAGGACTT CGAGAGAACATCCCTTTTCCAAAAGCTTGAAGTTCGACTGAAGGATATGACACTGGAATATTGGGCTAAACGTTCTGTACTAATCGGGTACCAGGTTTCA AAGAAGGTTCGGGCGATGAACCCTCCTTGCGATTCTCCTGGCCAAACAAATTCTCTCATGTCAAATGAAGCCTCCCCAAATCACACAGCAGGGAAGGCTT CTTCTTCTGGTGTGAAGAGGAAAGAATCAAATGACTCAATCCCAGTTGGAGGCAACAGAAAGCTCTCAAGAACAAGAGAAAGTTCAAATGTTTCAGGATC CAACTCTGGAGGACCGATGGCTCCTGGTGATGCCGTAGCAGACCAGCAACCAAATGATGTTGCAGCTTTGATGCTGGACAAGACCAAACTACTAGCGCAA TTACTCGAATACGAGAAGAGGAAAGAAGAGCTAAAGTCAAAGGTAACGCAGCTGACGAAGGAACTGGAAGAAGCAGATGGTGAATATGATCGGATGCTGG CAAATTTAACCTTGGTGGATATTGAAATGTAA
AA sequence Show only first row Show all	>Lus10039959 pacid=23173463 polypeptide=Lus10039959 locus=Lus10039959.g ID=Lus10039959.BGIv1.0 annot-version=v1.0 MRVVTYVPVTLESQGKFSQTVQRIDHQEYTTQSRRQEPEKNSCADIFRTPRPGSRILLQEQSPVNDVDICSTSTLPSAPICRQFWKAGSYSNVNCSKATL QNGKNHIHVHPGFLHSNATSHKWVFGAIAEMLDNAVDEIKNGATYVIVDKVSNPRDGGSALLIQDDGGGMDPQAIRQCLSFGFSEKKFSGAIGQYGNGFK TSTMRLGADAIIFTRHIKDWRATQSIGLLSYSFLMHMGHDRIIVPIVDYEFNTETNQLEISSLQTKESFDANLSLLMQWSPYSTETELLKQFDDVGLHGT KVVIYNLWYDNDGNLELDFDTDLQDIRIEGCTREVRKVNDQHLANRLHYSLHAYLSILYLQVPDAFSMILRGQVVKPYNLADDLKFQEYILYKPKVGAST LLQKVITTIGFVKDAPRVSIHGFNIYHKNRLIKPFMKVVDCTNSSGRGVVGILEANFMEPTHNKQDFERTSLFQKLEVRLKDMTLEYWAKRSVLIGYQVS KKVRAMNPPCDSPGQTNSLMSNEASPNHTAGKASSSGVKRKESNDSIPVGGNRKLSRTRESSNVSGSNSGGPMAPGDAVADQQPNDVAALMLDKTKLLAQ LLEYEKRKEELKSKVTQLTKELEEADGEYDRMLANLTLVDIEM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	0	1
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10027384 [exp]	1.0	0.9364
					Lus10014678 [exp]	3.5	0.9337
AT1G61780			postsynaptic protein-related (...		Lus10002066 [exp]	3.7	0.9072
AT5G40600		EMB1875	unknown protein		Lus10003647 [exp]	4.2	0.9105
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	4.9	0.9179
AT1G76480			unknown protein		Lus10006035 [exp]	5.3	0.9213
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10003406 [exp]	6.0	0.9088
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	6.7	0.9190
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10042852 [exp]	6.9	0.8981
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	7.5	0.9157

Compare expression of checked genes

Lus10039959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.