Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63000 269 / 1e-92 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027691 [exp] 377 / 3e-134 AT5G63000 260 / 3e-88 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078600 [exp] 265 / 3e-91 AT5G63000 291 / 3e-101 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10039963 pacid=23173450 polypeptide=Lus10039963 locus=Lus10039963.g ID=Lus10039963.BGIv1.0 annot-version=v1.0 ATGGATCCCACGGAAGAGGCAGAAAACGCTGTGCCAGAGGGGTCTAAAAAATTAGCGGGGACTGTTAGTTGGAGCTCAGCTACCCTTATCGGATTTTTCA CAGGCATGATATATGGTGCTTCTAAGGAGGCCTCTGCATCCGCTAGTATAGATGCAGATGTAATGCTGAAGCTAGGAAGCACACCGAACAAGATGAAGCA GTATAACTTGATGAGAGATGCAATGGAGAGACGATTTCTCAAGGTAAGTCGTGGAGCTTTGGTTGGTGGGGTGCGACTCAGCATGTTTACTGCTGCATTT TGTGGTCTGCAAAACTTGATGGCTGAGCAACGGGGTGTGCACGATGTTTTCAATGTCGTTGGAGCCGGTTCAGTCACTGCTGCTGCGTTTGGTCTAATCT TGCCTGGATCTCTTCGGTGGCGTGCTAGGAATGTGCTACTTGGATCAACTCTCGGCGCAGCAGTGTGTTTTCCCCTAGGTTGGATCCAGATGAAGTTGGT GGAGAAGGCAAATGAAGGGAACGTGACTGGTGATCGTAGTTCCTCCAACACAAAGGGTGGTGTGGGAGCTGCAATTGAGAGGCTTGAAGCAAAAGTGAAG AGAGACCAAGATACATGA
AA sequence Show only first row Show all	>Lus10039963 pacid=23173450 polypeptide=Lus10039963 locus=Lus10039963.g ID=Lus10039963.BGIv1.0 annot-version=v1.0 MDPTEEAENAVPEGSKKLAGTVSWSSATLIGFFTGMIYGASKEASASASIDADVMLKLGSTPNKMKQYNLMRDAMERRFLKVSRGALVGGVRLSMFTAAF CGLQNLMAEQRGVHDVFNVVGAGSVTAAAFGLILPGSLRWRARNVLLGSTLGAAVCFPLGWIQMKLVEKANEGNVTGDRSSSNTKGGVGAAIERLEAKVK RDQDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63000			Mitochondrial import inner mem...		Lus10039963 [exp]	0	1
AT3G51980			ARM repeat superfamily protein...		Lus10038535 [exp]	4.6	0.8315
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10022057 [exp]	12.9	0.8755
AT4G14320			Zinc-binding ribosomal protein...		Lus10038130 [exp]	17.9	0.8668
AT5G23535			KOW domain-containing protein ...		Lus10022069 [exp]	18.5	0.8614
AT2G20450			Ribosomal protein L14 (.1)		Lus10008246 [exp]	22.3	0.8511
AT1G07770		RPS15A	ribosomal protein S15A (.1.2)		Lus10043001 [exp]	24.7	0.8564
AT5G50810		TIM8	translocase inner membrane sub...		Lus10022450 [exp]	26.2	0.8492
AT1G74270			Ribosomal protein L35Ae family...		Lus10027754 [exp]	32.1	0.8514
AT1G22780		RPS18A, PFL1, P...	40S RIBOSOMAL PROTEIN S18, POI...		Lus10042603 [exp]	38.3	0.8509
AT2G44820			unknown protein		Lus10036053 [exp]	41.6	0.8406

Compare expression of checked genes

Lus10039963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.