Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62960 248 / 3e-78 unknown protein AT1G10660 201 / 2e-60 unknown protein AT2G47115 178 / 5e-52 unknown protein AT3G27770 177 / 8e-52 unknown protein AT1G06110 47 / 3e-05 SKIP16 SKP1/ASK-interacting protein 16 (.1) AT1G70505 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027693 [exp] 473 / 6e-167 AT1G06110 49 / 2e-06 SKP1/ASK-interacting protein 16 (.1) Lus10027692 [exp] 390 / 3e-134 AT5G62960 355 / 2e-122 unknown protein Lus10042109 [exp] 316 / 1e-104 AT5G62960 397 / 1e-138 unknown protein Lus10002386 [exp] 226 / 3e-70 AT5G62960 320 / 5e-109 unknown protein Lus10029133 [exp] 207 / 6e-62 AT1G10660 338 / 5e-115 unknown protein Lus10032130 [exp] 201 / 4e-60 AT5G62960 303 / 2e-101 unknown protein Lus10014556 [exp] 199 / 2e-59 AT5G62960 305 / 3e-102 unknown protein Lus10038056 [exp] 164 / 2e-46 AT1G10660 252 / 1e-82 unknown protein Lus10009991 [exp] 159 / 1e-44 AT1G10660 246 / 3e-80 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G082300 [exp] 380 / 1e-130 ND / Potri.015G078100 [exp] 377 / 2e-129 AT1G06110 48 / 3e-06 SKP1/ASK-interacting protein 16 (.1) Potri.015G078200 [exp] 270 / 8e-87 AT5G62960 382 / 8e-133 unknown protein Potri.012G082400 [exp] 262 / 1e-83 AT5G62960 387 / 1e-134 unknown protein Potri.010G042600 [exp] 238 / 2e-74 AT1G10660 372 / 1e-129 unknown protein Potri.001G347400 [exp] 221 / 5e-68 AT3G27770 314 / 9e-107 unknown protein Potri.014G115200 [exp] 189 / 8e-56 AT2G47115 340 / 4e-117 unknown protein Potri.002G190200 [exp] 186 / 1e-54 AT2G47115 344 / 1e-118 unknown protein Potri.017G027000 [exp] 60 / 2e-09 AT1G06110 545 / 0.0 SKP1/ASK-interacting protein 16 (.1) Potri.007G130900 [exp] 56 / 3e-08 AT1G06110 557 / 0.0 SKP1/ASK-interacting protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0159 [flax] [poplar] E-set PF04379 [flax] [poplar] DUF525 ApaG domain
Representative CDS sequence Show only first row Show all	>Lus10039964 pacid=23173394 polypeptide=Lus10039964 locus=Lus10039964.g ID=Lus10039964.BGIv1.0 annot-version=v1.0 ATGAATGCGCTGAATCTAATATTGTATCCAGATTTTGGAGTCAGCGCGAGGAGGAGCTGCTGTCTTCTTACCGGCGGATGCTCCTCCTCCTCTTCTGATC TGGAGAGAAAGCCGTTGTCGCTGAGCTTGAGCTATCCGCGTAGGACCTGGAGTTGTCGTATTGTCGCATGTGCGGCGGAGCGAAGTGGCAATGGCGACGA CGGCGAAACGACTTCTTCTTCCAGTTCCGAAGCGGCTGGATCTTTGGCGAATTCGTTCTTGAAACGGAGCCAGACGTACGCTTTGCTCAAGCAGCAGATG GTGGTCGCCGCACAAGCTGAGGACTACAAAGAAGCTGCGAGAATTCGAGATTCCTTGAGAATCTTCGAGGAAGAGGAGCCTCTTCTTCGGCTTCGTCAAA AATTAAAGGATGCAATCGAAGACGAACGTTTCGAGGATGCAGCCAAGTACCGTGATGCGCTAAACCAACTTGCACCACATTCCCTCTTGAAATGTTCAAG TGATGCGACCACTCTGGGGATCAGAGTTCAAGTAAGGAGCGTTTACATTGAGAGTCGTAGTCAGCCGTTGAAAGGACAGTACTTCTTTGCATATCGAATA CGGATCACCAATGACTCAAACCGTCCTGTTCAACTTCTCAGAAGACATTGGATCATCACAGATGCTAACGGCAAGACTGAGAATGTTTGGGGAATGGGCG TAATAGGTGAGCAGCCAGTAATTCTGCCTAACACAGGCTTTGAATACTCGTCCGCGTGCCCTTTATCAACTCCTAACGGTAGAATGGAAGGCGACTTTGA GATGAAACACATTGACAAAGTAGGGTCTGCGTCATTCAACGTGGGTATCGCACCTTTTTCTCTGTCAACGCTGGGGAATGGAAGCGATATTACATTTACT TTGGTCACTTTGTATTTCGCTATGGGGTGTTTGATATCAACTCGTGGATGTTCAAAGTATCAGCAGAGGGTTAGTCGGGATAAGGTTGGCGATGTAGAGT TACATGCAGTTGAGGATCGACAGCCTGCTGGGATATTTGTTTATGCCTTTCAGATAATTTTCCAGATAAATGCTGGAGCTGTGATGCTGACAGATTGCGT GTTTTGGTTCATAATCGTCCCCTTTCTTGCTATCAAAGATTACCATCTCAATCCCTTGACGATAAGTATGCATTCAATGAACGCCTTCTTCTTGCTTGGA GACACTTCCTTGAACTGCATGCCATTCCCATTCTTTAGGATTGCATATGTCATCCTTTGGACCATCATATACGTGCTTTTCCAGTGGATTCTGCACGCTT TTGTCAGAATATGGTGGCCGTACCCATTCCTTGACATTCCATCTCCATATGTCCCCTTATGGTACTTGGCGGTTGCGATGATGCATATCCCTTGCTACGG CGTGTTTGCTTTCATTGTCAAGCTCAAGAACACATGGTTCACCAAATGGTTCGTGGACTCGTACCGGGGCAGGAGGTGA
AA sequence Show only first row Show all	>Lus10039964 pacid=23173394 polypeptide=Lus10039964 locus=Lus10039964.g ID=Lus10039964.BGIv1.0 annot-version=v1.0 MNALNLILYPDFGVSARRSCCLLTGGCSSSSSDLERKPLSLSLSYPRRTWSCRIVACAAERSGNGDDGETTSSSSSEAAGSLANSFLKRSQTYALLKQQM VVAAQAEDYKEAARIRDSLRIFEEEEPLLRLRQKLKDAIEDERFEDAAKYRDALNQLAPHSLLKCSSDATTLGIRVQVRSVYIESRSQPLKGQYFFAYRI RITNDSNRPVQLLRRHWIITDANGKTENVWGMGVIGEQPVILPNTGFEYSSACPLSTPNGRMEGDFEMKHIDKVGSASFNVGIAPFSLSTLGNGSDITFT LVTLYFAMGCLISTRGCSKYQQRVSRDKVGDVELHAVEDRQPAGIFVYAFQIIFQINAGAVMLTDCVFWFIIVPFLAIKDYHLNPLTISMHSMNAFFLLG DTSLNCMPFPFFRIAYVILWTIIYVLFQWILHAFVRIWWPYPFLDIPSPYVPLWYLAVAMMHIPCYGVFAFIVKLKNTWFTKWFVDSYRGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62960			unknown protein		Lus10039964 [exp]	0	1
AT3G45050			unknown protein		Lus10041331 [exp]	1.7	0.9630
AT5G42765			unknown protein		Lus10032714 [exp]	3.2	0.9416
AT5G53490			Tetratricopeptide repeat (TPR)...		Lus10007788 [exp]	9.9	0.9379
AT1G27510			Protein of unknown function (D...		Lus10039967 [exp]	11.0	0.9162
AT5G27560			Domain of unknown function (DU...		Lus10029915 [exp]	11.3	0.9250
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10002626 [exp]	12.2	0.9030
AT5G44520			NagB/RpiA/CoA transferase-like...		Lus10008059 [exp]	12.3	0.9281
AT1G54500			Rubredoxin-like superfamily pr...		Lus10015945 [exp]	13.2	0.9268
AT5G37360			unknown protein		Lus10004762 [exp]	14.0	0.9250
AT5G11270		OCP3	overexpressor of cationic pero...		Lus10002029 [exp]	16.0	0.8919

Compare expression of checked genes

Lus10039964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.