Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039427 [exp] 126 / 3e-36 ND / Lus10018977 [exp] 108 / 4e-31 ND / Lus10000424 [exp] 67 / 2e-14 ND / Lus10033081 [exp] 61 / 9e-12 ND / Lus10021853 [exp] 49 / 1e-07 ND / Lus10004513 [exp] 43 / 2e-05 ND / Lus10039555 [exp] 42 / 6e-05 ND / Lus10006395 [exp] 41 / 0.0001 ND / Lus10002049 [exp] 39 / 0.0006 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039965 pacid=23173511 polypeptide=Lus10039965 locus=Lus10039965.g ID=Lus10039965.BGIv1.0 annot-version=v1.0 ATGAAAGACCACATAAGACAGTTGGAGAAAAACCACGTGCCCCCCCCAAGACAGATGAAAAGCATAATCAACCATGAGTATGGAAGTATGATCAATATGA AACTGATCTACAATGAGACCGCGAAGATAAGACGGTTGAGGTTGGGCGGAATGAACTCCATGCAATGGACGGTGACAAAAGCGATAAAATTGGGGTACTT CATTACGTACCTCTGGGATGCCAAAGACCGTGTCACTCATCTCTTCATCTCACACGCGGAGTCACTTTGGATGCTGCACGTGTGGTATTTCGTCGTCTTG ATCGACTCCATGTACAACAAGAACATGTACAAGAAGGTGGTGGTTCAGTTTGTAGGTGTGACGACGGTTACGAAGAGCTTCAACATGGGTTGGCACTTGT GGAAGATGAAACGAAGGAGTCATACGGTTGGGCACCGAGTCAGTTGA
AA sequence Show only first row Show all	>Lus10039965 pacid=23173511 polypeptide=Lus10039965 locus=Lus10039965.g ID=Lus10039965.BGIv1.0 annot-version=v1.0 MKDHIRQLEKNHVPPPRQMKSIINHEYGSMINMKLIYNETAKIRRLRLGGMNSMQWTVTKAIKLGYFITYLWDAKDRVTHLFISHAESLWMLHVWYFVVL IDSMYNKNMYKKVVVQFVGVTTVTKSFNMGWHLWKMKRRSHTVGHRVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039965 [exp]	0	1
AT5G39130			RmlC-like cupins superfamily p...		Lus10003267 [exp]	6.6	0.9248
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10017677 [exp]	7.0	0.9127
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	7.2	0.9454
					Lus10028570 [exp]	10.2	0.9454
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030693 [exp]	12.5	0.9454
AT1G27170			transmembrane receptors;ATP bi...		Lus10008414 [exp]	13.9	0.8532
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10032129 [exp]	14.4	0.9454
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	15.0	0.8939
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10033879 [exp]	16.1	0.9454
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	17.7	0.9454

Compare expression of checked genes

Lus10039965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.