Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27510 615 / 0 Protein of unknown function (DUF3506) (.1) AT4G33630 340 / 2e-107 EX1 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027696 [exp] 1176 / 0 AT1G27510 635 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10042125 [exp] 513 / 3e-176 AT1G27510 358 / 7e-116 Protein of unknown function (DUF3506) (.1) Lus10007064 [exp] 194 / 5e-53 AT4G33630 667 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10020435 [exp] 189 / 4e-51 AT4G33630 655 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10002370 [exp] 179 / 9e-51 AT1G27510 164 / 2e-45 Protein of unknown function (DUF3506) (.1) Lus10027693 [exp] 43 / 0.0006 AT1G06110 49 / 2e-06 SKP1/ASK-interacting protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079700 [exp] 801 / 0 AT1G27510 599 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.015G075000 [exp] 793 / 0 AT1G27510 582 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.017G043100 [exp] 348 / 7e-111 AT4G33630 674 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Potri.015G078100 [exp] 46 / 4e-05 AT1G06110 48 / 3e-06 SKP1/ASK-interacting protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0671 [flax] [poplar] PF12014 [flax] [poplar] DUF3506 Domain of unknown function (DUF3506)
Representative CDS sequence Show only first row Show all	>Lus10039967 pacid=23173438 polypeptide=Lus10039967 locus=Lus10039967.g ID=Lus10039967.BGIv1.0 annot-version=v1.0 ATGGCCGGGTCAAATCTCTGCTTCGTCGGCGGCCAACCTGTATCAACGGCGCCTCAATTGACGCCCCTCTCTTACCTTGATTCCTCAATTAAGAAGCCTA CCACTGCCAACTTGCCGCTCGTTTCTGGTCTCGCTTGGAACCATCTTCTTAATCACAGCTACTCCAAGCTCAGAACTCCCAACAACTTTGTCAATTTTCG TAGTTTCCGCTGCGCTGGCGGTAGTATCAATGCGGAGAAGAAGAGTACCACTACCAATGATATTTGCTCCTCTTTATATTCTTCTCTCGATTGGGATTGG AGCAGATGGGGACGTCATTTCGCTGAGATCGAACAAGCTGAGAGTTTCGCCTCTGTTCTCAAGTTTCAACTAGAAGAAGCGATTGAAAAGGAAGACTTCC AGGAAGCAGCAAAATTGAAGAATACAATTGCTGAAGCTACTTCGATGGATAGTGTTGCTGAGATCATGTCGGAACTGAAGAATGCAATTGATGAAGAGCG CTACCACGATGCTTCAAGGTTATGTAAACACACTGGAAGTGGATTGGTAGGATGGTGGGTGGGTTATTCAACAGATTCCACTGATCCTTTTGGAAGACTT GTTCGTATAACACCTAGCATGGGAAGATTTGTTGCCAAGAGTTACACTCCAAGGCAGTTGGTTAATGCATCATCCGGCACTCCATTGTTTGAGATATTTG TTGTCAAAGATACAGATGATAGTTATGTGATGCAAGTCGTTTGGCTGCGAGCCAAAGCAAGTTCGACAACTTCAACGTCTAAATATGTAAACCAATCAAT GTCTGAGGCGGAAAATGCATTGGACGAAGATGTCAAGCAAAATGAAGTTAACCAAGCGGGAACTGAAGAAAAGGGTATAGATATCGAGGGTGCAACTGAG GAGGGAATTAAAAGTGTGATAAATTTTCTTAAAGATAAAATTCCAGGGTTGAAAGTAAATGTTATGAATGTTAATGTTTCTGGAGAAGTGGTGGAGGATG ATGATTCTATGAAGCAGTTGATTGAAGATGAGGACGAAATCGCAGCGTTGAGTGAAGACTCTGAAGATGAATCTGAGAAGTTGGAAGAGATTCGGCCGGA TGGTATTTCTCTGTTGGATAGTAGTGACTCAGAGGATGGAAAGGATCTCGATATGAAACTTTTTATCAGTGGAGTGGTGCATGAGGATAGTCCTGTGAAG AATGATTACTCCCGTGTCCCAGCTGAAATCAAGGATGTAGAGAAAGATACTTTTGTCTTACACATCCCTCGGAGACATTTAGACTATGTCAATTCAGATA GTAAGCCATCTAAGTTGAAAGTTGCAGCCATTGCAGCTAAAGGTGTTACTGAACTTATGCCTCCAGATGTAGCGAAGGCATTCTGGGGTGGTGACAAACT TTCTTCAAAGGTTTCCAGGAACGTGCGTGAAATATTCAAACTTGCTGTTAGCCAGGCTCAGAAAGCAAGTAGATTGTCAGAGAATACAAACTTCTCCAGA ATTTCAAATACTAATAACAATCTAGATCCATTTGATGGCCTCTATGTTGGTGCTTTCGGCCCTTATGGAACAGAGGTTGTTCAGTTGAAGCGTAAATATG GTCGCTGGAGTAATGGAAAGGACTCCTCCAATATGGAGTTCTTCGAGTATGTTGAGGCAGTGAAGTTGACTGGGGATCTAAATGTTCCTGCTGGCCAGGT AACATTTCGTGCCAAAATTGGGAAAGGGACTCGCAATTCCAACCGTGGGATGTATCCTGATGAACTAGGAGTGGTGGCGAGTTACAAAGGTGAAGGTAGA ATAGCAAACTTTGGGTTCAAAAACCCGAAATGGGTAGAAGGAGAACTTCTTCAGCTGAACAGCAAGGGAATTGGACCGTATGTGAAAGGTGCAGATCTTG GATTCCTGTATGTTGTACCAGAGCAAAGCTTCCTGGTTCTGTTCAACCGGCTGACATTGCCCGAATAA
AA sequence Show only first row Show all	>Lus10039967 pacid=23173438 polypeptide=Lus10039967 locus=Lus10039967.g ID=Lus10039967.BGIv1.0 annot-version=v1.0 MAGSNLCFVGGQPVSTAPQLTPLSYLDSSIKKPTTANLPLVSGLAWNHLLNHSYSKLRTPNNFVNFRSFRCAGGSINAEKKSTTTNDICSSLYSSLDWDW SRWGRHFAEIEQAESFASVLKFQLEEAIEKEDFQEAAKLKNTIAEATSMDSVAEIMSELKNAIDEERYHDASRLCKHTGSGLVGWWVGYSTDSTDPFGRL VRITPSMGRFVAKSYTPRQLVNASSGTPLFEIFVVKDTDDSYVMQVVWLRAKASSTTSTSKYVNQSMSEAENALDEDVKQNEVNQAGTEEKGIDIEGATE EGIKSVINFLKDKIPGLKVNVMNVNVSGEVVEDDDSMKQLIEDEDEIAALSEDSEDESEKLEEIRPDGISLLDSSDSEDGKDLDMKLFISGVVHEDSPVK NDYSRVPAEIKDVEKDTFVLHIPRRHLDYVNSDSKPSKLKVAAIAAKGVTELMPPDVAKAFWGGDKLSSKVSRNVREIFKLAVSQAQKASRLSENTNFSR ISNTNNNLDPFDGLYVGAFGPYGTEVVQLKRKYGRWSNGKDSSNMEFFEYVEAVKLTGDLNVPAGQVTFRAKIGKGTRNSNRGMYPDELGVVASYKGEGR IANFGFKNPKWVEGELLQLNSKGIGPYVKGADLGFLYVVPEQSFLVLFNRLTLPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27510			Protein of unknown function (D...		Lus10039967 [exp]	0	1
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10023013 [exp]	1.4	0.9272
AT5G11270		OCP3	overexpressor of cationic pero...		Lus10002029 [exp]	2.2	0.9201
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10008721 [exp]	2.6	0.9327
AT1G66330			senescence-associated family p...		Lus10004049 [exp]	4.0	0.8928
AT5G38600			Proline-rich spliceosome-assoc...		Lus10034080 [exp]	6.8	0.8867
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	8.1	0.9024
AT2G24395			chaperone protein dnaJ-related...		Lus10020173 [exp]	8.7	0.8849
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10020942 [exp]	10.4	0.9226
AT5G62960			unknown protein		Lus10039964 [exp]	11.0	0.9162
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	11.0	0.9233

Compare expression of checked genes

Lus10039967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.