Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52580 867 / 0 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 146 / 5e-38 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 142 / 9e-37 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 142 / 1e-36 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 142 / 2e-36 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G41940 138 / 1e-34 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G49350 131 / 4e-32 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 129 / 2e-31 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G24390 121 / 5e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 114 / 4e-26 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006646 [exp] 1058 / 0 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 1053 / 0 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10027697 [exp] 641 / 0 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10027698 [exp] 597 / 0 AT5G52580 299 / 3e-96 RabGAP/TBC domain-containing protein (.1.2) Lus10022905 [exp] 144 / 5e-37 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 141 / 4e-36 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 142 / 7e-36 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 140 / 3e-35 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022356 [exp] 134 / 6e-33 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066300 [exp] 952 / 0 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.018G127500 [exp] 904 / 0 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.005G227400 [exp] 149 / 4e-39 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 137 / 5e-34 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 134 / 3e-33 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 130 / 1e-31 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 130 / 1e-31 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 124 / 3e-30 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.001G419100 [exp] 123 / 7e-30 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.017G023200 [exp] 115 / 1e-26 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF12068 [flax] [poplar] PH_RBD Rab-binding domain (RBD) CL0266 [flax] [poplar] PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10039968 pacid=23173469 polypeptide=Lus10039968 locus=Lus10039968.g ID=Lus10039968.BGIv1.0 annot-version=v1.0 ATGCTGACCAGAACCGAGAGCGGAAATAGGAATACGTGCAGCGAGCCGGAAGGCGCTGAGGTGATTTATTTGAAGGATAATGTCACGATTCATCCGACGC AGTTCGCTTCCGAGAGGATCAGCGGGAGAGTGAAGCTGGTTAAGCAAGGAAGCTTAGTGTCTATGACATGGATTCCATACCGAGGACAAAGCTCGAATAC TAGGCTCACTGAGAAAGATAGGAACCTGTACACGATCAGAGCTGTACCTTTCACGGATGTACGCTCTGTTCGTCGGCATACTCCAACTCTTGGGTGGCAC TACATAATTATTGTTCTATCATCAGGACTTGCATTTCCTCCTCTTTATTTTTACAATGGAGGTGTCAAGGAGTTTTTTGCTACATTGAAGCAGCATGTTC TGTTTGTCAGGTCATTGGAAGATGCAAATGTATACCTTGTGAACGATTTTGAGAGTCCTCTACAGAGAACTCTGTCGTCCTTGGAAATGCCTGGGGCTGT TTCCATTGGAAGTATGCCAAGTACCCCTCATTCAGGTGGTCAATCATCGTTAGTTACAGATGCTGGTAAAAATGGTGAAGCTCTTCCTCAAAGCATTTTG AAGTACAGGCAGAAAGCAAGTGACCCTGGTCGTGATCTTCATGTTCAAGTACTTGAAAAATTCTCTCTCGTGACCAAATTTGCTCGAGAGACAACACAGC TATTCCGTGAAAATAGCAATGGTTTTCGTGCTCCTGATACAAAAAAATACAGACTTCCCCGCCCTGATGCCCCTTACAAGGAAGAACCAAAGAAGAAGAT AGATCATGCCCCTTACGAGGAGAAACCAGAGAAGAAGATAGGTTATGCCCCTTACCAAGAAGAGACAGGGAAGAAGATGATAGTTAATGAAGAAGCTCAC GTTCCTTCAGATCCATTGGAGTTGGACAAACTGGCACTTGTTTGGGGAAAGCCGCGGCAGTCTTTGTTGGGTTCCAGAGAGTGGGCCACTTTCTTGGATT CCGAGGGACGAATCATGGATTCAAAAGGCTTAAGAAGAAGGATATTCTATGGAGGAATAGATCACACGATAAGGAAAGAGGTTTGGCCCTTTTTAGTGGG ATATCATGATTATGAATCAACGCATGCAGAGAGGGTGTACCTTAAGATGTCTAAGTGGACAGAGTATCAAACGATAAAGACACAGTGGCAGAGTATCTCC CCTGAACAAGCCAAGAGATTTACGAAATACAGGGAACGGAAAGGACTTATCGACAAAGACGTGGTGCGGACGGACAGATCGCTACCCTTCTATGAAGGAG ATGATAACCCAAATATAAAGATGCTGCATGATATTCTGTTGACATACTCATTCTATAACTTTGATCTTGGCTACTGTCAGGGTATGAGTGATATACTATC TCCGATTTTGTACGTGACTGAGGATGAATCAGAATCATTTTGGTGTTTTGTGTCATTGATGGAACGCCTTGCACCAAATTTTAATCGGGACCAACATGGC ATACACTCTCAACTGTTTGCAGTTTCAAAGTTGGTAGAATTGTTAGACATACCATTGCAGAACTACTTGGAGCAAAACGACTGCTTGAATTACTTCTTCT GCTTCCGCTGGCTTCTGATCCAATTTAAAAGGGAGTTTGAATACGAGAAAATAATGTGCCTATGGGAGGTGTTATGGACGCACCATTTGTCGGAGCATCT GCATCTTTACTTGTGTGTTGCAATCTTGAAGCGTTGCCGCAACAAAATCATGGGGGAGCAGATGGATTTCGACACGCTGTTGAAATTCATCAATGAACTG AGTGGCCATATCGACCTGGATCCGTTGCTGAGGGATGCTGAGGCGCTGTGCATATATGCTGGTGAGAACGGTGCTGCTCGTATACCCCCAGGTACTCCTC CTTCATTGCCTGCGGAGAACGAAAATAGCTTGCCATATTCCCTGGAGGACGAAGTTCTGTAA
AA sequence Show only first row Show all	>Lus10039968 pacid=23173469 polypeptide=Lus10039968 locus=Lus10039968.g ID=Lus10039968.BGIv1.0 annot-version=v1.0 MLTRTESGNRNTCSEPEGAEVIYLKDNVTIHPTQFASERISGRVKLVKQGSLVSMTWIPYRGQSSNTRLTEKDRNLYTIRAVPFTDVRSVRRHTPTLGWH YIIIVLSSGLAFPPLYFYNGGVKEFFATLKQHVLFVRSLEDANVYLVNDFESPLQRTLSSLEMPGAVSIGSMPSTPHSGGQSSLVTDAGKNGEALPQSIL KYRQKASDPGRDLHVQVLEKFSLVTKFARETTQLFRENSNGFRAPDTKKYRLPRPDAPYKEEPKKKIDHAPYEEKPEKKIGYAPYQEETGKKMIVNEEAH VPSDPLELDKLALVWGKPRQSLLGSREWATFLDSEGRIMDSKGLRRRIFYGGIDHTIRKEVWPFLVGYHDYESTHAERVYLKMSKWTEYQTIKTQWQSIS PEQAKRFTKYRERKGLIDKDVVRTDRSLPFYEGDDNPNIKMLHDILLTYSFYNFDLGYCQGMSDILSPILYVTEDESESFWCFVSLMERLAPNFNRDQHG IHSQLFAVSKLVELLDIPLQNYLEQNDCLNYFFCFRWLLIQFKREFEYEKIMCLWEVLWTHHLSEHLHLYLCVAILKRCRNKIMGEQMDFDTLLKFINEL SGHIDLDPLLRDAEALCIYAGENGAARIPPGTPPSLPAENENSLPYSLEDEVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52580			RabGAP/TBC domain-containing p...		Lus10039968 [exp]	0	1
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10005428 [exp]	4.1	0.8313
AT5G04885			Glycosyl hydrolase family prot...		Lus10013647 [exp]	4.7	0.7830
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10027804 [exp]	13.0	0.8199
AT1G25570			Di-glucose binding protein wit...		Lus10041488 [exp]	17.0	0.7830
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10022986 [exp]	23.6	0.7544
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	24.0	0.8214
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	33.1	0.7898
AT5G19670			Exostosin family protein (.1)		Lus10034951 [exp]	43.5	0.7580
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Lus10036024 [exp]	44.9	0.7450
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	44.9	0.7681

Compare expression of checked genes

Lus10039968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.