Plant FIBer expression Database

Lus10039971 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G12550 491 / 5e-169 NUB1 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008818
[exp]
838 / 0 AT2G12550 616 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G061500
[exp]
573 / 0 AT2G12550 577 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Potri.018G118143
[exp]
566 / 0 AT2G12550 572 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0214 UBA PF00627 UBA UBA/TS-N domain
Representative CDS sequence
>Lus10039971 pacid=23173421 polypeptide=Lus10039971 locus=Lus10039971.g ID=Lus10039971.BGIv1.0 annot-version=v1.0
ATGTCTAAGCTGAGAGTTGCAGGGACATGGTCAGGGGTTCTGGACGAAGTAGACTTGGATAATTGGACGGTACCCGTTTTGAGAAACGAAGTCGCTAAGC
GATCAAACATTTCCACTGCCTCAATCAAGTTGATTTGCGCCGGCAGAATACTCAAAGACGACGACGGTACGGTGAAGCTTTCCCAGCTGGGCGTCAAAAG
CAATTCCAAGGTTCTGGCTAGCAAGGTTTCCGTCGACGAAGGGAAATCCTTGAAGGATGAGTCGGTCGCTGAGGAGGATCGCAATCGCAGACTCACTCGA
GTCAAGGCAGCTGTGAGTGCATTGTCGAAAAGGCACGCAGAGGGTGCACTTCCGCTCGAGGACTTCAACATAGAAATTGAAGACCAACTTGGCAATAGAC
TGTACTTATCAGAAGCTGATCGACAGGCACTGATGATGGGTCTGATGCTCCATACAAATGGGAAAGGACTTATCAGAAAAAGAATGTTTAGGGATGCTTT
AGAAGTGCTGAGTATGGCAGAGGAATCCTTCTCTCTTTGTGATCAGAAGACTGTTAAGCGTGTTGATAACATTGCAATGCTTCAAATGGACATGGTGTGG
TGCTATTTCATGCTGAAAGACATTGCTTGTCTCACAGTTGCTGGAGCACGTCTCGAAAAGGCCAGGGAAGGATTTGAACGTTCTCATGGCAAAGATGGTT
CTCGTCTCAAACTCCTTCAAGCTGGCAACTCTTCAGGGCTTGCGTTATATTTGAGATTGGAACTACTCGAAGCCATTGTGGCATATCATAGCGGTCAGCT
TGAGAAATCCAGGAGATATTTGATGTCTGCACAGACTAAATTCAAACAGCTAGAAATATCAGATGAAGCTTTATCGGTTGTCATGGGGATGGGTTTCAAA
GAAAAAGAAGCAAAGAGGGCACTTAGAATCAACACTCAAGATATTGGATGTGCAGTTGAGTTTCTAGTTGAGGAGAAGGCACGGAGAGCACAGAAACGAG
AAGAAGACATTCGTCGAGAAACTGAAATCAAGGAGCAAAAAAGGTACGGTGTAACTCCCTTAAAGAAAGCGGTGGATATTGAACTGCTCAAGACATTGGT
CTCCATAGGGTATGAGAAGGAACTTGCTGCTGAAGCTCTTCGACGTAACGAAAATGACACTCAGAAAGCATTGGACGATTTAACAAATCCAGAAACTAAT
ACTAACATCCAGGTATTTTTTGACTCCTCTCTTCAATGTGCCAGCAAAGTAAAACGTGAAGCTGTTTTTCAATCTTACTTTGGGTTGAGTTGCAGAACTA
CATTGAATCAAGAAAAGCCAAAAGACAGCGGAAACATGCAGACTCTCAAATCCAACAACTTGCGTCCATGGGGTTTGACATGTCTCATAATAATGCAGCA
ACTCCTCCAACAACGACCAGGTCCAAAACCTGAAGCTGCTATGGAAGCGGCAAGCAATGCTGATGCTAATGCTAATTCTGATGCTTCTAACCCGCAACTC
ACGGACCATGCAATTCCGGAGGAAGAAATGGAAAATACCTCAGTGGAGCAGCGGGATGCTGAAATGGAGGATGAGATAGCGGGCGAAGTAGCACAGGAGG
ATGCTTTATCAGATTATGACATTGATGTAACCACAGAAGGGGAAGCCATTAATGAGTACTTGGCATTGCTGGATTCAACAGGTAGTAGCAGTGGAACAGC
TTCAACTTCTGGCTAA
AA sequence
>Lus10039971 pacid=23173421 polypeptide=Lus10039971 locus=Lus10039971.g ID=Lus10039971.BGIv1.0 annot-version=v1.0
MSKLRVAGTWSGVLDEVDLDNWTVPVLRNEVAKRSNISTASIKLICAGRILKDDDGTVKLSQLGVKSNSKVLASKVSVDEGKSLKDESVAEEDRNRRLTR
VKAAVSALSKRHAEGALPLEDFNIEIEDQLGNRLYLSEADRQALMMGLMLHTNGKGLIRKRMFRDALEVLSMAEESFSLCDQKTVKRVDNIAMLQMDMVW
CYFMLKDIACLTVAGARLEKAREGFERSHGKDGSRLKLLQAGNSSGLALYLRLELLEAIVAYHSGQLEKSRRYLMSAQTKFKQLEISDEALSVVMGMGFK
EKEAKRALRINTQDIGCAVEFLVEEKARRAQKREEDIRRETEIKEQKRYGVTPLKKAVDIELLKTLVSIGYEKELAAEALRRNENDTQKALDDLTNPETN
TNIQVFFDSSLQCASKVKREAVFQSYFGLSCRTTLNQEKPKDSGNMQTLKSNNLRPWGLTCLIIMQQLLQQRPGPKPEAAMEAASNADANANSDASNPQL
TDHAIPEEEMENTSVEQRDAEMEDEIAGEVAQEDALSDYDIDVTTEGEAINEYLALLDSTGSSSGTASTSG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G12550 NUB1 homolog of human NUB1, ubiquit... Lus10039971
[exp]
0 1
AT1G15520 ATABCG40, ABCG4... Arabidopsis thaliana ATP-bindi... Lus10041668
[exp]
8.8 0.6985
AT4G24200 Transcription elongation facto... Lus10033586
[exp]
9.0 0.7231
AT1G78610 MSL6 mechanosensitive channel of sm... Lus10000913
[exp]
10.9 0.7379
AT2G03140 alpha/beta-Hydrolases superfam... Lus10033426
[exp]
16.6 0.7249
AT3G59910 Ankyrin repeat family protein ... Lus10005306
[exp]
17.0 0.6632
AT3G11280 MYB Duplicated homeodomain-like su... Lus10014837
[exp]
21.6 0.7145
AT2G45910 U-box domain-containing protei... Lus10040825
[exp]
22.5 0.7142
AT1G47240 ATNRAMP2, NRAMP... NRAMP metal ion transporter 2 ... Lus10004317
[exp]
31.9 0.7058
AT3G49060 U-box domain-containing protei... Lus10039245
[exp]
32.7 0.6878
AT1G53510 ATMPK18 ARABIDOPSIS THALIANA MAP KINAS... Lus10005568
[exp]
33.2 0.6719

Lus10039971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.