Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35080 349 / 2e-121 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008819 [exp] 553 / 0 AT5G35080 358 / 3e-125 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061600 [exp] 452 / 7e-162 AT5G35080 343 / 5e-119 unknown protein Potri.018G118200 [exp] 437 / 8e-156 AT5G35080 333 / 5e-115 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0226 [flax] [poplar] M6PR PF07915 [flax] [poplar] PRKCSH Glucosidase II beta subunit-like protein
Representative CDS sequence Show only first row Show all	>Lus10039972 pacid=23173561 polypeptide=Lus10039972 locus=Lus10039972.g ID=Lus10039972.BGIv1.0 annot-version=v1.0 ATGATGAAATCCTTGTGGTTAGTTGCTCTTCTTCTAGCTTCTGTTTCCAGCTACGTTCTAGCCGATCAGATCCTCCCAGCTCACGTTGGTGGTTCATTGA GTCGCAGCTCTCGTAATCCCAAGTATAAGATCGAGTTCCACCCAGAAGACTCTCCATTTCATCCTGACGATGATCAAGAGTCTATTGCTATGCCTGATAA CAACGGGAATAAATACTTATGCTACTTGCCTAAGATTGAGAAAGCCAAGAGTGGAAAGCCAATTAATCAGTTGAACATAAGCAGCATGATTGTGGAAACT GAGCAACGTGTTAAACTGAAGACACCTGATGAGTTACTTGAAGTGTTGAAAGACCGATGTTTTATCAGGCAAGAAGGTTGGTGGTCTTATGAGTTCTGCT ACGAGAAAAAGTTAAGGCAGCTTCATGTGGAAGATGATAAGATTTTCAAATTCCTCCAGGTGGTTCAAGAATTCGTCTTGGGTGTTTACGATGAAGAGGC CACAGCTACATTCAACCAGAACGTATCCGATATTTCAACCCTTAAGGATCCTCGTTCAAAAGATGCATCTCAAAGATACCATGCTCATCAGTATACGAAT GGGACCCTTTGCGACCTCACTAATCAACCTCGAGAAACTGAGGTGAGATTTGTATGCTCTGAGCCAAGAGCTATGATTAGTTCTATCACGGAGCTATCAA CTTGCAAGTACGCACTCACAGTACACTGTCCGATGCTTTGCAAGCACCCACTGTTCCAAGAAGAGAGACCAGTGTGGCACACCATCAACTGCAATGTGTT GCCCAAGGAAAGCAAAGTTGAAAAAGAGAGGAAGGCTGAGGATGATAAACAAATCTACATGGTCACCGAGGTTAAGAATCCAGCCAATGACGAGCCGGTG GAGTGA
AA sequence Show only first row Show all	>Lus10039972 pacid=23173561 polypeptide=Lus10039972 locus=Lus10039972.g ID=Lus10039972.BGIv1.0 annot-version=v1.0 MMKSLWLVALLLASVSSYVLADQILPAHVGGSLSRSSRNPKYKIEFHPEDSPFHPDDDQESIAMPDNNGNKYLCYLPKIEKAKSGKPINQLNISSMIVET EQRVKLKTPDELLEVLKDRCFIRQEGWWSYEFCYEKKLRQLHVEDDKIFKFLQVVQEFVLGVYDEEATATFNQNVSDISTLKDPRSKDASQRYHAHQYTN GTLCDLTNQPRETEVRFVCSEPRAMISSITELSTCKYALTVHCPMLCKHPLFQEERPVWHTINCNVLPKESKVEKERKAEDDKQIYMVTEVKNPANDEPV E

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35080			unknown protein		Lus10039972 [exp]	0	1
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10023717 [exp]	1.4	0.9189
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	3.2	0.9030
AT5G03460			unknown protein		Lus10014419 [exp]	4.6	0.8997
AT5G58740			HSP20-like chaperones superfam...		Lus10040670 [exp]	5.4	0.8596
AT1G65020			unknown protein		Lus10024543 [exp]	5.5	0.8949
AT4G25670			unknown protein		Lus10039276 [exp]	7.5	0.8991
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	7.7	0.8914
AT1G25682			Family of unknown function (DU...		Lus10041495 [exp]	8.9	0.8848
AT2G46080			unknown protein		Lus10036385 [exp]	9.5	0.8904
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Lus10030981 [exp]	11.3	0.8379

Compare expression of checked genes

Lus10039972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.