Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06150 611 / 0 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G29230 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 374 / 8e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 370 / 2e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 367 / 6e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 358 / 1e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 360 / 5e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59200 356 / 1e-116 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 355 / 7e-115 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 357 / 1e-114 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008825 [exp] 1097 / 0 AT1G06150 614 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10029436 [exp] 404 / 2e-133 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 398 / 5e-132 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 387 / 3e-127 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 380 / 3e-124 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 373 / 2e-123 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 373 / 2e-123 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 374 / 4e-122 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 372 / 1e-121 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258766 [exp] 785 / 0 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G105700 [exp] 415 / 1e-137 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 405 / 7e-136 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 406 / 2e-134 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G125500 [exp] 395 / 4e-131 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 394 / 8e-130 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G035900 [exp] 391 / 6e-129 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 388 / 3e-128 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G086100 [exp] 383 / 3e-127 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 373 / 4e-122 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039974 pacid=23173405 polypeptide=Lus10039974 locus=Lus10039974.g ID=Lus10039974.BGIv1.0 annot-version=v1.0 ATGAGTTTTCGAGCCAACTGCGTAGTTACCCACTTGAAGCATTGCTCCAAGATCAGCGATGTGGAGTCGGCCTTCGCCCGCATGATCAAAGTTGCGGCAC ACCAAGACTGTTTCCTGATGAACCAATTCATCACAGCTTGTTCCGCACTTGGTGCCACGGATCAGGCCGTTTTGGCATGTTCCCAGATGGACAATCCGAA TGTTTTTGTGTTCAACGCGATGCTGAAAGGATTCGTCGAAAACCATAGACCGACTGAGGCTGTCAAATACTATGTTCGGATGTTGAGAGCTCAGTTGTCG TCGACGAGTTACACCTTTTCGTCATTGGTTAAAGCGTGCTGCTTGGTAAGTGATCCGAGGGTTGGGGAATCGGTTCATGGACAGAGTTTGAAAAACGGGC TTGCTTCGAGTGTGTTTGTCTGCACTACTTTGATTGAGTTTTACTATGGTTTCGAAAGGATTTTTTATTCCCTCAAGGTGTTCGACGAAATGCCTGAGAG AGATGTCTTCGCGTGGACAACGATGGTTTCTTGTCTTGCTCGTGCAGGGGAGTTGAGTTACGCAAGGAGGTTTTTTGATACGATGCCTGAAAGGAATATA GCTACTTGGAATACGATGTTGGATGGATATGTACGGTTGAAGGATGTCGAGTCTGCTGAGCAGCTGTTTAGTCAAATGCTCGCCAAAGATGTTATTTCGT GGACTACTATGATTAACTGCTATGCTCAAAATGAGAAATTTAGAGAAGCAATAGGAGTCTTTTCTGAGATGACTAGCGATGGGATTATTCCTGATGAAGT GACCTTAGCAAGTGTGATTTCGGCTTGTGCCCATCTTGGAGCTCTTGACTTAGGCAAGGAAATACACCACTGTGTAATGCTGAATGGGTTTGTTGTTGAT GTCTATATTGGGTCTGCTTTAATTGATATGTATGCAAAATGTGGGTGCCTAGAAAGGTCTCTTTTGGTGTTCTACAAGTTGAGAGATAGAAACCTTTTCT GTTGGAATTCCATTATCGATGGGCTTGCCGTTCATGGATATGCAGAAGAAGCGCTAGCAATGTTTTCCACGATGGAGAGGGAGGGAGTTAAGCCAAATGG GGTGACTTTCATCAGTGTCCTAAGTGCTTGTGCTCATTCAGGACTTGTTGAAGAAGGTCGCAAGTGGTTCAACATCATGACTCTTAAATATTCGTGCCAT CCTCAGCTAGAGCACTATGGATGCATGGTTGATCTATTGAGCAAAGCTGGTTTGCTTGAAGAAGCACTTAGCTTTATAAGAACCATGAACATGGAACCTA ATGTCGTTATTTGGGGAGCACTGCTAGGGGGTTCTAAGCTTCATAGAAACTTAAAAATTGCCCAAATTGCTGTCAAGGAATTGATGGTATTGGAGCCAGC CAACAGTGGGCATTATGCTCTTTTGGTTAGTTTGCATGCTCAAGTTGATCGGTGGAGCGATGCTGCAAAAGTTAGGTGGAAAATGAAGGAACTAGGAGTC GAGAAGTGTTTTCCTGGGTCCAGCTGGATTGAGCTGGATAAGAGAATTCATCAGTTTGCGGCATCAGATAAGTCTCACCCATCTTCGGATAACATATTTT CTGCCCTGATTGAATTGGATGGGCAGTTAAAACTAGCCGCAAATATACCTCCTGAACTCTTTTATCTTTTATAA
AA sequence Show only first row Show all	>Lus10039974 pacid=23173405 polypeptide=Lus10039974 locus=Lus10039974.g ID=Lus10039974.BGIv1.0 annot-version=v1.0 MSFRANCVVTHLKHCSKISDVESAFARMIKVAAHQDCFLMNQFITACSALGATDQAVLACSQMDNPNVFVFNAMLKGFVENHRPTEAVKYYVRMLRAQLS STSYTFSSLVKACCLVSDPRVGESVHGQSLKNGLASSVFVCTTLIEFYYGFERIFYSLKVFDEMPERDVFAWTTMVSCLARAGELSYARRFFDTMPERNI ATWNTMLDGYVRLKDVESAEQLFSQMLAKDVISWTTMINCYAQNEKFREAIGVFSEMTSDGIIPDEVTLASVISACAHLGALDLGKEIHHCVMLNGFVVD VYIGSALIDMYAKCGCLERSLLVFYKLRDRNLFCWNSIIDGLAVHGYAEEALAMFSTMEREGVKPNGVTFISVLSACAHSGLVEEGRKWFNIMTLKYSCH PQLEHYGCMVDLLSKAGLLEEALSFIRTMNMEPNVVIWGALLGGSKLHRNLKIAQIAVKELMVLEPANSGHYALLVSLHAQVDRWSDAAKVRWKMKELGV EKCFPGSSWIELDKRIHQFAASDKSHPSSDNIFSALIELDGQLKLAANIPPELFYLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	0	1
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10008825 [exp]	1.0	0.7915
AT1G77170			Tetratricopeptide repeat (TPR)...		Lus10029884 [exp]	2.0	0.7292
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	5.7	0.7598
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10025624 [exp]	7.5	0.7594
AT5G46460			Pentatricopeptide repeat (PPR)...		Lus10015256 [exp]	9.7	0.7161
					Lus10033036 [exp]	15.5	0.6072
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10012209 [exp]	18.0	0.6955
AT1G64530		NLP6	Plant regulator RWP-RK family ...		Lus10032423 [exp]	26.0	0.6466
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Lus10009008 [exp]	31.1	0.6625
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10039896 [exp]	33.6	0.7031

Compare expression of checked genes

Lus10039974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.