Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49390 309 / 6e-104 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G54000 307 / 3e-103 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 302 / 3e-101 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20550 301 / 7e-101 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 195 / 2e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 194 / 3e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 191 / 1e-57 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 189 / 2e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 185 / 1e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G21420 182 / 1e-54 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008826 [exp] 659 / 0 AT1G49390 298 / 1e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008824 [exp] 322 / 6e-109 AT1G49390 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022292 [exp] 211 / 1e-65 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10016145 [exp] 209 / 2e-65 AT5G20550 225 / 2e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10026173 [exp] 191 / 8e-58 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10030934 [exp] 189 / 4e-57 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10040112 [exp] 188 / 1e-56 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10008822 [exp] 180 / 7e-56 AT5G54000 131 / 2e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032574 [exp] 185 / 2e-55 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121700 [exp] 352 / 8e-121 AT5G20400 426 / 8e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G062500 [exp] 350 / 3e-120 AT5G20400 432 / 2e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G121800 [exp] 345 / 4e-118 AT5G54000 407 / 2e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030451 [exp] 290 / 2e-96 AT1G49390 321 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030500 [exp] 290 / 2e-96 AT1G49390 321 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030400 [exp] 288 / 6e-96 AT1G49390 320 / 2e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G381700 [exp] 191 / 5e-58 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G382400 [exp] 189 / 3e-57 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G355100 [exp] 185 / 2e-55 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G355200 [exp] 182 / 3e-54 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10039975 pacid=23173470 polypeptide=Lus10039975 locus=Lus10039975.g ID=Lus10039975.BGIv1.0 annot-version=v1.0 ATGGACTCCATCAGTGAACTACTCGCAATCACTAGCAAAAACCCACCAGCAAAGTACATTCACCCGAATGGAGTCAGCGGAGGCCAAGACCATTTTCTTC TTCCACTGATAGAGATTCCAGTTGTTGATGCCAGTCACTTCATCACTCCATCCGCTAATACTGCGAAAGAAGTTGACAAACTCCACTCTGCTCTCAACTC ATTTGGCTGCATTATGATAACAAATCATGGAGTGGAGAGTTCACTTCTGGACAATGTGCGGATGGTCTTCAAGAAATTCCTTGAACTTCCAAGGGAAGAG ATGCTCAAATACTGGAATGAAGGGTTTCAAGGGTATGGGAGTGACCCGACCGTCACAGATTCATTAGTCCATGACTGGTCCCATAGGCTGCGCCTTCTAA TATGCCCTGAAGAAATGAGAGACATGAAATATTGGCCTGAGAATCCGCAAGAATTTAGGGAAGTTCTCCACCAATACAGCAGCAAGTTACAAGTGCTTCA CGATGTCATGATGAAGGCCATGGCCAGGTCACTGAAACTAGAAGAAAGCACCTTTCTGCAAATGATTGGAGAACCAGTTAGAATGTCTGCAAGATTCAAT TTCTACCCACCATGTCCAACGCCAAATCAGGTTCTTGGACTTAAGGCTCATTCTGATGGAACAGTGATCACCTTTCTTCTGCAAGACAAAGAAGTGGAAG GGCTTCAAATTCTGGTAGAAGACAAATGGTTTCGAGTTCCGATCATCCCAGAGGCTCTGGTCCTTATTGTTGGCGAACACCTAGAGATAATGAGCAATGG AGAGTTCAAGAGTCCAATTCACAGAGCAGTTGTGAACTCGGAGAAACAGAGAATATCCCTGGCTGTTCCTTCCATTCCACAGGACGATACAGAAATTGAA CCAGTTGAAGGATTAATCAGTGAAGGCCAACCGAGGGTGTTTAAAACATTGAAGTATAGTAGAAGTATCCACCTTCACTACTATCAGAGTGGGAAGAGAA TAGTAGACGATTTAAGAATATAA
AA sequence Show only first row Show all	>Lus10039975 pacid=23173470 polypeptide=Lus10039975 locus=Lus10039975.g ID=Lus10039975.BGIv1.0 annot-version=v1.0 MDSISELLAITSKNPPAKYIHPNGVSGGQDHFLLPLIEIPVVDASHFITPSANTAKEVDKLHSALNSFGCIMITNHGVESSLLDNVRMVFKKFLELPREE MLKYWNEGFQGYGSDPTVTDSLVHDWSHRLRLLICPEEMRDMKYWPENPQEFREVLHQYSSKLQVLHDVMMKAMARSLKLEESTFLQMIGEPVRMSARFN FYPPCPTPNQVLGLKAHSDGTVITFLLQDKEVEGLQILVEDKWFRVPIIPEALVLIVGEHLEIMSNGEFKSPIHRAVVNSEKQRISLAVPSIPQDDTEIE PVEGLISEGQPRVFKTLKYSRSIHLHYYQSGKRIVDDLRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10039975 [exp]	0	1
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008826 [exp]	1.0	0.8293
					Lus10007681 [exp]	8.8	0.7070
					Lus10002061 [exp]	12.8	0.7512
AT4G24630			DHHC-type zinc finger family p...		Lus10033527 [exp]	13.4	0.7224
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10022298 [exp]	16.7	0.6682
AT3G22810			Plant protein of unknown funct...		Lus10009509 [exp]	18.5	0.7588
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017139 [exp]	20.1	0.7298
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10042908 [exp]	23.3	0.6411
AT3G49055			unknown protein		Lus10027489 [exp]	29.8	0.6359
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10040137 [exp]	30.0	0.7257

Compare expression of checked genes

Lus10039975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.