Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48200 924 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008827 [exp] 1371 / 0 AT3G48200 925 / 0.0 unknown protein Lus10002461 [exp] 521 / 3e-176 AT3G48200 425 / 1e-139 unknown protein Lus10035212 [exp] 394 / 8e-119 AT3G48200 476 / 3e-149 unknown protein Lus10032047 [exp] 379 / 2e-113 AT3G48200 457 / 2e-142 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079000 [exp] 1090 / 0 AT3G48200 1134 / 0.0 unknown protein Potri.012G087400 [exp] 1058 / 0 AT3G48200 1075 / 0.0 unknown protein Potri.001G330000 [exp] 439 / 1e-135 AT3G48200 492 / 3e-155 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039976 pacid=23173396 polypeptide=Lus10039976 locus=Lus10039976.g ID=Lus10039976.BGIv1.0 annot-version=v1.0 ATGGGCTCGCTGAAGCTCCTCTCATGGCTTGTACCCTTTCTTTCTTTCCTGGCCTTTAGAGCTCTTCTCTGTGGTTGCGATGCTGCCGCTGAGGTGTCCC TCAAGTTCTTGAAAACTCCAAATCAGTTTTCTCACTTGAGTAGAGCTACTTTTGAGTTCCAAGCATTTTTGGGTGGCAATGAGAGTGATTTTTGTCAGGA CTGTACCTTTAGTTGCAAGCTAGATGGTGGCAATCTATCATATTGTGGAGCCAGGAAAGTTTACTATGCAGGCTTAGAAGATGGCAGCCATAAGTTTGAG GTTTGCAGTGATGGCAGTAACTCCCAAGTTGTCTGCTCCCACTACAACTGGACTGTTGACACTGTTCCTCCAACTGCTTCTATCACGTCATCATCACCTT TCACAAATTCCTTAAATGTATCTGTAAATGTTACTTTTACTGAGCCATGCAGCGCCGGAGAAGGAGAAGGATTTAGATGCTCATCAGTGGATTCTTGCGA TCTGCTAGTGTATGGAGGAGGCCAAGTGATACCATCTTCATTCACCATCCTGGAACGCAACATCAAGTATTCTCTTGTGGTGGCTTTATCTCATGGTTCC GCATACGGGCGAGTCGTGTTGGCTATGAACAAGAACTTTTGTACCGATGCTGCTGGTAACATGTTTACTAGAACAGATACTTCTACTTCTGTTGTGCGGT TTGATAGAAGGAGTGTGTTTGTTGACATGAGAACCCATGTCCCGGAACGGCTACTTGAGCTTCAAGGTGAAACTAGGACCGTTGAAGCAACTAACAGCGC CAATAACCTCAAGCTGCATCTCTACTTCTCAGAGCCTATCATGAACTCGTCTGCTCAAGTTCTAAATTCTCTCAACATAAGTGGAGGTGCACTGCTTTCG CTAGGAGGAGAAAGCCTTGGAAACCGTCGATTTGGTTTTACGGTTGTAAATGTTTCTGCCATTTCCATTGTGACGGTTGCACTTCGTTCGGACTCAATTA TAAGCATACCCGGGACTCCTGTCTCTCCAATTGCACCAGCCACTTTCCTCTATGATTCCGAAAAGCTTGCTGTGAGGCTAAGTACGACGTCTAACACTAG GACACGGGAGCACAACATTCTGGTATCGATAAAGTTCATGAAGCCTGTATTTGGTTTCAACTCTTCCTTTCTATCCATCTCTGGAGGAAAATTGCAGAGG CAAGCCAAGCCGCCTTTCACTGTTCATAATCTCCCATCCAATGTTCTACAAGTGAGGCACTATTCCATACCCAAAATCTCGTGCATAATATCCAAAATTA CTACTGCTTGCTTCATTGCTACTTGTTTTGTTGCTGGAATGCTAACTGTGTCAACAGCCAGCCTTCAGTCCGTTGGAGCATTTTCAAGGCCATCTGCTCT CCTGACATCTGAGCCGACGAGGAGTCTTTTCAGAATTGCGTGCTACATTCAGATCTTCGCTTTATCTAGATGGCTGGCTGTTATGCTACCAGCTGAATAC TATGAACTCTCAGTTGGCCTTCAATGGAGTATTCCATACTTCACTAGTCTCCCTTGGGAATCTGGAAGTTCTCACCCATTAATGTCCTCACTACCAAATT CATCTGTTATTCCACATTCATCCATTTCTAGGTTCCACAACCAAGAAATTCCAAAGCAAATCCAGCAGGAAAAGGACAGCTTGAGCAAGTCTGCTTCAGC ATATGGATTGCCTCTCACTCCAATGGAATACAGATTCTTTTTCGAGAGCGAGGACATGAAGCCGGAAGCAGACTATATTATGGAATCACAAGGTTCGAAT GGATGGAAGGATTTTCACAGAAGCATGTTCTGGCTTGCAGTGATTTGTGGTGGGCTGATACTGCTACATGCCATACTTTTCTTGATCATCAAGTACAAGA AGGTAGATGTTCAAAGGCACATCAGCTATGGAGCATTGGTATTCCCAAGATTCGAAATAGTCCTCCTGGTTTTTGCATTGCCTTGCATCTGTAGGGCCTC AACTGGCTTGGTGAAAGGTCAAACTGTGTCAGGCAGTGTAGTTGGGATTCTGCTGCTTTCAGTGGTTGGTGTGTTCCTCCTTGGCTTGCTATTTTTCCTT TCAACTGGAATCACTCTTGGAAAGCTACTTCAGTACAAGGAAGTTCATCAAGTAGGACAGAAATTCCACTGGTACCAGGAGCTCATTCGAGTCACCTTAG GGCCGGGGAAGAGAGGCCAATGGACATGGAAAGACCAACCGAACTCTGTCCAGCTAACGAAATACGGTACATTGTTTGAAGACCTTAGAGGTCCTCCAAA GTACATGCTTTCTCAGATAGGAAAGGGCAGTATTACAAGAAATTACGGGGAACGAATCATTGCATCAGATGACGAAACTGAAGATGCAGAAGCTCCTTTC ATCCAGAAACTCTTTGGAATCCTCAGAATCTACTACACATTGCTCGAATCCATCAAGCGAGTCACTTTAGGAATCGTTGCTGGTGCATACGCCAACACCT GGTCATCGAGAGCTCCAAGCACGATTTTACTGTGCTTCACCTCATTCCAGCTCTTCTTCATTGTTCTCAAGAAGCCCTTCATAAAGAAGAAGGTGCAGTT AGTTGAGATCATCTCCCTTTCCTGCCAAGTGATTATGTTCGCTATTTGTCTCATTCTCTCAAAGATGGAACCACTTTCCATCAAAGGCGAAACCAGAGTG GGAATCGTCATGGTTTTAATGTTTTTAACTGGTTTCGTAGCTCATACAGCGAATGAATGGTATGCATTATACAGACAAATAAAGCGTCTAGACCCGGAAA TGAAATCCTGGTCAAACGGAGTGAAGACGGCAGCGATAGGGATCCTCATTATCTTTACCCCGAAGAAAGCACGTAGTTACTTGGAAAGCAAGCTACCCAC TGACCAAGGGGGAGAGAAAGAGACAGGTGGTGTCGTCGGAGAGGGGGGCTCATCGGCAGAGAGGAGCTATAAGAGCTCAGGGACAACTCCGGTGGTCGGT AGACCATGGACTAAGCAGCTAAGAGAATTGGCAAAGGCAAGTTTTACAAGAGAAGGAAGTGGGACTACTGGAGGAGGAAGTGGTTTCCCAACTGATCCTT CTAGCAGCAGGACCAAATGGAGTGGGCTATGGGGGAGCAAGAAGAGCGGGAGCTCATCTCAGCATTCTTCTGCTGATTTTAAGTCCAAACCAAACAGGTT GTACAAAGATTTAGAAGCCATATTTGCATCAAAACGATGA
AA sequence Show only first row Show all	>Lus10039976 pacid=23173396 polypeptide=Lus10039976 locus=Lus10039976.g ID=Lus10039976.BGIv1.0 annot-version=v1.0 MGSLKLLSWLVPFLSFLAFRALLCGCDAAAEVSLKFLKTPNQFSHLSRATFEFQAFLGGNESDFCQDCTFSCKLDGGNLSYCGARKVYYAGLEDGSHKFE VCSDGSNSQVVCSHYNWTVDTVPPTASITSSSPFTNSLNVSVNVTFTEPCSAGEGEGFRCSSVDSCDLLVYGGGQVIPSSFTILERNIKYSLVVALSHGS AYGRVVLAMNKNFCTDAAGNMFTRTDTSTSVVRFDRRSVFVDMRTHVPERLLELQGETRTVEATNSANNLKLHLYFSEPIMNSSAQVLNSLNISGGALLS LGGESLGNRRFGFTVVNVSAISIVTVALRSDSIISIPGTPVSPIAPATFLYDSEKLAVRLSTTSNTRTREHNILVSIKFMKPVFGFNSSFLSISGGKLQR QAKPPFTVHNLPSNVLQVRHYSIPKISCIISKITTACFIATCFVAGMLTVSTASLQSVGAFSRPSALLTSEPTRSLFRIACYIQIFALSRWLAVMLPAEY YELSVGLQWSIPYFTSLPWESGSSHPLMSSLPNSSVIPHSSISRFHNQEIPKQIQQEKDSLSKSASAYGLPLTPMEYRFFFESEDMKPEADYIMESQGSN GWKDFHRSMFWLAVICGGLILLHAILFLIIKYKKVDVQRHISYGALVFPRFEIVLLVFALPCICRASTGLVKGQTVSGSVVGILLLSVVGVFLLGLLFFL STGITLGKLLQYKEVHQVGQKFHWYQELIRVTLGPGKRGQWTWKDQPNSVQLTKYGTLFEDLRGPPKYMLSQIGKGSITRNYGERIIASDDETEDAEAPF IQKLFGILRIYYTLLESIKRVTLGIVAGAYANTWSSRAPSTILLCFTSFQLFFIVLKKPFIKKKVQLVEIISLSCQVIMFAICLILSKMEPLSIKGETRV GIVMVLMFLTGFVAHTANEWYALYRQIKRLDPEMKSWSNGVKTAAIGILIIFTPKKARSYLESKLPTDQGGEKETGGVVGEGGSSAERSYKSSGTTPVVG RPWTKQLRELAKASFTREGSGTTGGGSGFPTDPSSSRTKWSGLWGSKKSGSSSQHSSADFKSKPNRLYKDLEAIFASKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48200			unknown protein		Lus10039976 [exp]	0	1
AT2G48070		RPH1	resistance to phytophthora 1 (...		Lus10029632 [exp]	1.4	0.9218
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010591 [exp]	3.0	0.8998
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10025822 [exp]	4.7	0.8674
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10042673 [exp]	5.3	0.8879
AT3G04550			unknown protein		Lus10042554 [exp]	7.1	0.8740
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10042346 [exp]	8.1	0.9015
AT5G36930			Disease resistance protein (TI...		Lus10004719 [exp]	8.8	0.8623
AT2G36145			unknown protein		Lus10022687 [exp]	12.6	0.8988
AT1G17430			alpha/beta-Hydrolases superfam...		Lus10012409 [exp]	15.7	0.8524
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10003289 [exp]	16.5	0.8763

Compare expression of checked genes

Lus10039976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.