Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15690 1356 / 0 FUGU5, AtVHP1;1, AVP-3, ATAVP3, AVP1 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) AT1G16780 448 / 9e-146 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase family protein (.1) AT1G78920 438 / 2e-142 AtVHP2;1, AVPL1, AVP2 vacuolar H+-pyrophosphatase 2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, vacuolar H+-pyrophosphatase 2, vacuolar H+-pyrophosphatase 2 (.1), vacuolar H+-pyrophosphatase 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038111 [exp] 1407 / 0 AT1G15690 1385 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10038114 [exp] 1182 / 0 AT1G15690 1170 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008828 [exp] 720 / 0 AT1G15690 697 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008044 [exp] 565 / 0 AT1G15690 561 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10034800 [exp] 462 / 2e-151 AT1G16780 1434 / 0.0 Inorganic H pyrophosphatase family protein (.1) Lus10008042 [exp] 428 / 5e-137 AT1G15690 422 / 1e-134 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10033345 [exp] 373 / 5e-117 AT1G16780 1174 / 0.0 Inorganic H pyrophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063000 [exp] 1396 / 0 AT1G15690 1336 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.018G119500 [exp] 1384 / 0 AT1G15690 1367 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.013G009400 [exp] 1270 / 0 AT1G15690 1237 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.005G018700 [exp] 1265 / 0 AT1G15690 1248 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.010G254200 [exp] 451 / 2e-147 AT1G16780 1266 / 0.0 Inorganic H pyrophosphatase family protein (.1) Potri.008G003502 [exp] 154 / 7e-42 AT1G16780 477 / 3e-164 Inorganic H pyrophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03030 [flax] [poplar] H_PPase Inorganic H+ pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10039977 pacid=23173430 polypeptide=Lus10039977 locus=Lus10039977.g ID=Lus10039977.BGIv1.0 annot-version=v1.0 ATGGTTTCCACCACGGTTCTGCCAGATCTCGGCACCGAAATTCTGATTCCGGTGTGCGCCGTCATCGGGATTGCCTTTGCTATCTTCCAGTGGATCCTCG TCTCGTCTATCAAGCTCACCCCTGGCGGCGGAAGGGATGGCGCCGCCGACAATAATGGTTACTCCGAACACCTGATTGAGGAAGAGGAAGGCGGGAACGA CCACACTGTCGTCGCTAAATGCGCAGAGATTCAAAACGCCATTTCTGAGGGTGCAACCTCGTTCCTTTTCACCGAGTACAAGTATGTTGGCTACTTCATG ATTGCGTTTGCTGTCCTCATTTTCGTTTTCCTGGGATCCGTTGAGGGATTCAGCACAAGTCATCATCCTTGCACCTATGATGCAAAGAAGATGTGCAAGC CTGCTCTGGCTACTGCTGCCTTCAGCACCGTCTCGTTTGTGCTCGGTGCTGTTACTTCAGTGGTTTCTGGCTTCCTCGGAATGAAAATTGCTACTTATGC AAATGCTAGGACAACCCTTGAGGCAAGGAAAGGAGTAGGGAAGGCTTTCATTGTGGCTTTCAGATCCGGCGCAGTCATGGGTTTCCTCCTTGCTGCAAAT GGTTTACTGGTTCTGTACATTACCATCAACCTCTTCAAACTGTACTATGGCGATGACTGGGGTGGCCTGTTTGAAGCTATTACCGGTTATGGTCTTGGAG GATCTTCCATGGCACTTTTTGGTAGAGTTGGAGGTGGAATTTACACCAAGGCTGCGGATGTTGGTGCTGATCTTGTTGGAAAAGTTGAGAGGAATATTCC TGAGGACGACCCAAGAAATCCAGCTGTGATTGCTGATAATGTTGGTGATAATGTGGGTGATATTGCCGGTATGGGATCCGATCTTTTTGGCTCATATGCT GAGGCATCTTGTGCTGCCCTAGTTGTTGCATCCATCTCATCTTTTGGCATTAATCACGAGTTTACGGCAATGCTTTATCCACTTATTATTAGTTCAATTG GGATCATAGTTTGTTTGATCACCACATTGTTTGCAACCGATTTATTTGAGATCAAAGCTGTAAAAGAAATTGAGCCAGCTCTGAAAAGGCAGCTCATCAT CTCAACAGTTCTGATGACTGTTGGGATTGCCATTGCAAGCTGGATTGCTCTGCCATCTTCTTTCACTATCTTCAATTTTGGGACACAGAAGGACGTGACA AACTGGCAACTATTCTTGTGCGTTGCTGTTGGTCTATGGGCGGGACTAATTATTGGATTTGTAACTGAGTACTACACCAGTAATGCATACAGCCCAGTTC AAGACGTTGCTGATTCTTGCCGAACTGGAGCTGCCACAAATGTTATTTTTGGACTTGCATTGGGATACAAATCCGTCATCATTCCAATATTTGCCATAGC AGTTAGCATTTTCGTCAGTTTCAGCTTTGCTGCTATGTATGGTATTGCGGTAGCTGCACTCGGAATGTTGAGCACAATTGCTACTGGCTTGGCCATTGAT GCTTATGGTCCTATTAGCGACAATGCAGGAGGTATTGCAGAGATGGCAGGAATGAGCCACAAAATCCGAGAGAGAACTGATGCTCTTGATGCTGCTGGGA ACACCACTGCTGCCATTGGCAAGGGTTTCGCTATAGGTTCTGCAGCACTCGTGTCATTGGCTCTGTTCGGTGCCTTTGTAAGCCGTGCATCAATATCAAC AGTAGATGTGTTGACACCGAAAGTTTTTATAGGTTTGATCGTGGGTGCTATGCTTCCTTACTGGTTCTCTGCGATGACGATGAAGAGCGTTGGAAGTGCA GCACTTAAGATGGTTGAGGAAGTCCGGAGGCAATTCAACACCATTCCTGGACTGATGGAGGGCACTGCCAAGCCTGATTATGCTACCTGCGTCAAGATTT CAACAGATGCCTCCATCAAGGAAATGATCCCACCTGGTGCACTTGTCATGCTCACACCCCTCATTGTTGGCATCTTCTTCGGAGTTGAAACTTTGTCCGG GGTCCTTGCTGGATCCCTTGTCTCCGGTGTACAGGTTGCGATCTCTGCATCCAACACTGGTGGCGCATGGGACAATGCCAAGAAGTACATAGAGGCGGGT GCGTCGGAGCATGCAAGAACCCTTGGCCCGAAAGGATCAGACCCGCATAAAGCAGCAGTGATCGGCGACACCATTGGAGACCCATTGAAGGACACATCTG GTCCATCACTCAATATCCTCATCAAGCTCATGGCAGTCGAGTCCCTTGTGTTTGCCCCATTCTTCGCAACTCACGGAGGCATTCTTTTCAAGCTATAA
AA sequence Show only first row Show all	>Lus10039977 pacid=23173430 polypeptide=Lus10039977 locus=Lus10039977.g ID=Lus10039977.BGIv1.0 annot-version=v1.0 MVSTTVLPDLGTEILIPVCAVIGIAFAIFQWILVSSIKLTPGGGRDGAADNNGYSEHLIEEEEGGNDHTVVAKCAEIQNAISEGATSFLFTEYKYVGYFM IAFAVLIFVFLGSVEGFSTSHHPCTYDAKKMCKPALATAAFSTVSFVLGAVTSVVSGFLGMKIATYANARTTLEARKGVGKAFIVAFRSGAVMGFLLAAN GLLVLYITINLFKLYYGDDWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA EASCAALVVASISSFGINHEFTAMLYPLIISSIGIIVCLITTLFATDLFEIKAVKEIEPALKRQLIISTVLMTVGIAIASWIALPSSFTIFNFGTQKDVT NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAID AYGPISDNAGGIAEMAGMSHKIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRASISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSA ALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQVAISASNTGGAWDNAKKYIEAG ASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGILFKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10039977 [exp]	0	1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	22.5	0.7544
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10003670 [exp]	25.2	0.6858
AT5G41350			RING/U-box superfamily protein...		Lus10024635 [exp]	29.3	0.7506
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10036919 [exp]	41.6	0.7171
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030569 [exp]	44.2	0.7006
AT1G27752			Ubiquitin system component Cue...		Lus10018693 [exp]	46.6	0.6805
AT1G32420			F-box and associated interacti...		Lus10011190 [exp]	74.3	0.7026
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10008110 [exp]	75.0	0.7132
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	88.0	0.6841
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	92.4	0.6387

Compare expression of checked genes

Lus10039977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.