Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11100 357 / 8e-119 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 354 / 8e-118 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 201 / 2e-59 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G04220 159 / 1e-43 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G20990 145 / 1e-38 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 133 / 3e-34 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 121 / 1e-29 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G61030 119 / 2e-29 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 50 / 2e-06 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G50260 49 / 6e-06 NTMCTYPE5.1 ,NTMC2T5.1 ,NTMC2TYPE5.1 N-terminal-transmembrane-C2 domain type 5.1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027709 [exp] 474 / 7e-169 AT1G05500 264 / 1e-84 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 398 / 1e-135 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 399 / 3e-135 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 351 / 2e-116 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 348 / 3e-116 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041396 [exp] 201 / 1e-59 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10036532 [exp] 200 / 1e-58 AT3G61050 672 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 149 / 1e-39 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10014127 [exp] 146 / 8e-39 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124000 [exp] 372 / 1e-124 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 370 / 4e-124 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 338 / 1e-111 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G150700 [exp] 205 / 7e-61 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G072800 [exp] 204 / 2e-60 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 160 / 5e-44 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 150 / 5e-40 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 142 / 2e-37 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.004G174600 [exp] 142 / 2e-37 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 142 / 3e-37 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10039979 pacid=23173487 polypeptide=Lus10039979 locus=Lus10039979.g ID=Lus10039979.BGIv1.0 annot-version=v1.0 ATGCAAATGTGGTTATTCAGTCCGATAGCCTCTGGAATTGTGGTGGGAATTATTCTGGTTTTCTTTCTCGTCTGCTCTCAGAAGAAAGCGCGGTCCAACC GGATTATGAAACACGCGAATACACTAGCGTCTTATGCCATGGTTAGCGATTTGGCCGATCCCCTGAAGTTGAATTGGCTTAATTACTTTCTCACCAAGAT CTGGCCATACGCTAATGAGGATGCTGAGCTAATAAAGATGTCAGTTGAATCAACTCTGGAGGAATACAGATCCATGAAGCTATCATCTCTCAGCTTCTCC GACTTCACCCTTGGTACCGTTCCCCCACAATTAACAGGAATATCAGAAGTGGAATATGATGGCAGTGGGGTTACTATGGAGTTGGAAGTGAACTGGAAAG GAAACCCAACCATACTACTTGATGTTAAGATGACAACGCATGCTGGTGTTACTCTAGCTGTGCAGATGATGGATATCGAGTTTAGTGGGGTGTTTAGGTT GATATTCAAGCCCTTGGTTGATCAACTTCCTTGCTTTGGAGCTGTTTCATATTCCCTGCTGACTGAAAAGAAAAAGTTGGAGTTTAAGCTTCAAGTAGTT GGAGGAGGTGACATTGGAACATCAATCCCTGGACTCTCCACTGTCCTAGAGGAAACTATACGCAATGCAATTGAAGACTCTATTACTTGGCCAGTCAGGA AAGTTGTCCCTATCTTGTCAGGGGATTTCAGCGAGTTGGAGTTGCAGCCATGTGGAAAACTACATGTGAAGCTAGTGCAGGCAAAGGACCTCATTGGGGA ATCAGATCCCTATGCTCTACTCTACATCAGGCCTTTACGGAACACAATACGAACAAGTGAAATCATGAGCAATGATTCAAACCCAATCTGGAATAAGGTG TTTGAATTTATTGTTGAGGACCAATCTACTCAGCACTTGCACGTTAAGATTTTTGATGATGAAGATTCTGAGCTAGTTGGATGTGCTAAAATTCCGTTGA AGGAGCTTCAAGTTGGTGAATGGAAGTCTGAGTGGTTGAAGCTGGTTAAGGATTTAGACGACCAAAGAGAGAATAAATACCAAGGGCAGGAGTGTAGGAA GGCTCGTATGAAGGCTAGCACAGAATCGGTGTTCACGAGGCAGCGAACAGTAGAACACCTGGTCTTGCAGTTGAAGGTGCTTACTCAAACGGTGCATCAA TCAGCATTTGAAGACAAGTGA
AA sequence Show only first row Show all	>Lus10039979 pacid=23173487 polypeptide=Lus10039979 locus=Lus10039979.g ID=Lus10039979.BGIv1.0 annot-version=v1.0 MQMWLFSPIASGIVVGIILVFFLVCSQKKARSNRIMKHANTLASYAMVSDLADPLKLNWLNYFLTKIWPYANEDAELIKMSVESTLEEYRSMKLSSLSFS DFTLGTVPPQLTGISEVEYDGSGVTMELEVNWKGNPTILLDVKMTTHAGVTLAVQMMDIEFSGVFRLIFKPLVDQLPCFGAVSYSLLTEKKKLEFKLQVV GGGDIGTSIPGLSTVLEETIRNAIEDSITWPVRKVVPILSGDFSELELQPCGKLHVKLVQAKDLIGESDPYALLYIRPLRNTIRTSEIMSNDSNPIWNKV FEFIVEDQSTQHLHVKIFDDEDSELVGCAKIPLKELQVGEWKSEWLKLVKDLDDQRENKYQGQECRKARMKASTESVFTRQRTVEHLVLQLKVLTQTVHQ SAFEDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10039979 [exp]	0	1
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	13.3	0.9516
AT1G16510			SAUR-like auxin-responsive pro...		Lus10018269 [exp]	18.2	0.9111
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10032355 [exp]	21.0	0.9385
AT1G72490			unknown protein		Lus10037689 [exp]	24.6	0.9363
AT1G65090			unknown protein		Lus10020377 [exp]	28.5	0.9346
AT5G16023		RTFL18, DVL1	DEVIL 1, ROTUNDIFOLIA like 18 ...		Lus10034071 [exp]	32.9	0.9339
AT2G04220			Plant protein of unknown funct...		Lus10019467 [exp]	37.2	0.9337
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10027862 [exp]	39.5	0.9329
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10029584 [exp]	39.6	0.8621
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	41.9	0.9325

Compare expression of checked genes

Lus10039979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.