Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20260 485 / 5e-168 Exostosin family protein (.1) AT5G33290 476 / 2e-163 XGD1 xylogalacturonan deficient 1 (.1) AT3G42180 471 / 5e-162 Exostosin family protein (.1.3) AT5G11130 461 / 7e-158 Exostosin family protein (.1) AT3G07620 380 / 2e-126 Exostosin family protein (.1) AT5G03795 368 / 4e-121 Exostosin family protein (.1) AT5G25310 344 / 2e-112 Exostosin family protein (.1) AT5G25820 292 / 2e-90 Exostosin family protein (.1) AT4G16745 288 / 4e-90 Exostosin family protein (.1.2) AT4G32790 289 / 6e-90 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005186 [exp] 664 / 0 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10027707 [exp] 466 / 2e-160 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 397 / 9e-133 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10008751 [exp] 380 / 2e-125 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 374 / 6e-123 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 372 / 6e-123 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10016058 [exp] 365 / 1e-122 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10013790 [exp] 370 / 2e-121 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 290 / 7e-90 AT5G25820 627 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124507 [exp] 543 / 0 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 541 / 0 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.T124607 [exp] 514 / 6e-179 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 512 / 2e-178 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.018G125058 [exp] 498 / 3e-172 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.T124707 [exp] 498 / 3e-172 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 495 / 4e-171 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.006G064800 [exp] 488 / 4e-168 AT5G20260 556 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 481 / 5e-166 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.006G064900 [exp] 476 / 3e-164 AT5G20260 530 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10039980 pacid=23173417 polypeptide=Lus10039980 locus=Lus10039980.g ID=Lus10039980.BGIv1.0 annot-version=v1.0 ATGGGGGAGCAGAGCTACTCCGGCAGCCGTCCGATTTACTCAGCCATCCCGATATTCCTTCTCTTGCTACTCCTACTCTTCACAGTCTCCCCCATCACCG ACAATCACTACTTTTCTAATCTATTTGCCTACTTCGGCAGCAGCAATGGTGACTACAGAGACGTCGATGTTGGTAGATCATTTAAAACCCAGAAGATGAT TAATGGTAGTAATAATGGTAGCAGTAGCAGTAGTGTGGAAATAATAGAAGAGGATTTGAGTAGAGCTAGAGCCGCCATACGAGAAGCTGTTCGGACTCAG AGCTATACGTCTTACAAGGAAGAACCCTTCATTCCCCGTGGTCCTGTTTATCGAAGTCCTTACGCTTTTCAACAGAGCCATATAGAGATGGTAAAGAGGT TCAAGATATGGACATACAAAGAAGGGGAGAGGCCATTAGTGCATCGAGCTCCCATGAGCAACATTTACTCGATTGAGGGCCAATTCCTCGATGAGATGGA GAGCGGGATATCTCAATTCAGAGCCAATTCTCCTGAAGAGGCCCACATGTTTTACCTTCCATTCAGTGTGGCTTCAATCATTCACTTCATTTACCAACCC ATCTTGTCCAAACAAGATTACAACCGTGACCGCCTCCAAAGGATTGTCGCCGACTACATAGACGTCGTCGCCGATAAATACCCCTTTTGGAATCGATCTC AAGGGGCAGATCATTTCATGGTCTCATGTCACGATTGGGCACCAGACATCTCTACGGCCAATCCGACACTTTACTCGAAATTCATCAGAGTCCTGTGCAA TGCCAACACCTCGGAAGGGTTCCAACCCTCACGGGACGCATCACTACCTGAAATCTACCTGGAATACGAGAGACTTGCTCCACGAAATGTAGGGCATGAC CCAATCAATAGGACCATTTTGGCCTTCTTTGCAGGGCGGGCCCACGGGTACATTCGGAGGATGTTGTTCGAGCACTGGAAAGATAAAGACGACAACCAGG TGCAAGTGTTCACAAAGCTCCCTAGTAGAGAGATATACACCTCCAAAATCGGGCGGAGCAAGTTCTGCTTGTGCCCTAGCGGCTATGAAGTCGCGAGCCC GAGGATTGTGGAGGCGATTAACCAAGGCTGCATTCCGGTCTTAATATCCATGAATTACTCGCTTCCATTTCGAGAAGTGTTGGATTGGGACAAGTTCACC GTGGGGATTCCAGTTGAGCGGATAGGGGATATCAAGAAGGTCTTGGAAGGGATCTCCGAAGAGAGGTATCTGGAGATGTATCATAGAGTTAGGAGTGTTG GGAGGCATTTTCTTATAAACCGCCCGGCTAAGCCTTATGATTTGCTTCATATGATTCTTCATTCTTTGTGGCTTAGGAGTTGCCATAGTTTCCTAGCTAC CTTCTCTCGGAGAACTCTTTCCCACAACCCTAACTGCCACTGCAACCACTCCAGCGTCACCATGGCCATCCTTCAATCGCACTCCGTCGCCTCCACCCGT CCTTCTATCGTTCCTCATTCATCTGCACCGCTAGCCGAACCGCGCTTCCCCCCAGGACCCATACCACCAATCACTCCTGCTCCTACACCGCAAGGCATGA CCCCTCCCCAACACCATGATAACCCCAAAAAGATTCCGACCGTGAGCGTTGACGGCGAACCCCAGGACCGCAACGACGGCAATCATCATCCCGGTGGTCG TAGCCCTTTCGTTCGCAGATATCGTCGCCCCAACCCCAGTCTCGGAATATGA
AA sequence Show only first row Show all	>Lus10039980 pacid=23173417 polypeptide=Lus10039980 locus=Lus10039980.g ID=Lus10039980.BGIv1.0 annot-version=v1.0 MGEQSYSGSRPIYSAIPIFLLLLLLLFTVSPITDNHYFSNLFAYFGSSNGDYRDVDVGRSFKTQKMINGSNNGSSSSSVEIIEEDLSRARAAIREAVRTQ SYTSYKEEPFIPRGPVYRSPYAFQQSHIEMVKRFKIWTYKEGERPLVHRAPMSNIYSIEGQFLDEMESGISQFRANSPEEAHMFYLPFSVASIIHFIYQP ILSKQDYNRDRLQRIVADYIDVVADKYPFWNRSQGADHFMVSCHDWAPDISTANPTLYSKFIRVLCNANTSEGFQPSRDASLPEIYLEYERLAPRNVGHD PINRTILAFFAGRAHGYIRRMLFEHWKDKDDNQVQVFTKLPSREIYTSKIGRSKFCLCPSGYEVASPRIVEAINQGCIPVLISMNYSLPFREVLDWDKFT VGIPVERIGDIKKVLEGISEERYLEMYHRVRSVGRHFLINRPAKPYDLLHMILHSLWLRSCHSFLATFSRRTLSHNPNCHCNHSSVTMAILQSHSVASTR PSIVPHSSAPLAEPRFPPGPIPPITPAPTPQGMTPPQHHDNPKKIPTVSVDGEPQDRNDGNHHPGGRSPFVRRYRRPNPSLGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	1.7	1.0000
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	2.4	1.0000
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	3.0	1.0000
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	3.5	0.9885
AT3G14250			RING/U-box superfamily protein...		Lus10022064 [exp]	3.7	0.9586
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	4.9	0.9651
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	5.0	0.9739
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015645 [exp]	6.3	0.9295
					Lus10013881 [exp]	6.3	0.9563
					Lus10030782 [exp]	6.7	0.9466

Compare expression of checked genes

Lus10039980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.