Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20260 255 / 1e-82 Exostosin family protein (.1) AT5G11130 241 / 4e-77 Exostosin family protein (.1) AT3G42180 235 / 1e-74 Exostosin family protein (.1.3) AT5G33290 214 / 1e-66 XGD1 xylogalacturonan deficient 1 (.1) AT5G03795 200 / 9e-61 Exostosin family protein (.1) AT5G25310 189 / 6e-57 Exostosin family protein (.1) AT3G07620 177 / 1e-52 Exostosin family protein (.1) AT5G25820 152 / 4e-42 Exostosin family protein (.1) AT4G32790 147 / 2e-40 Exostosin family protein (.1) AT4G16745 140 / 4e-38 Exostosin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027707 [exp] 366 / 5e-126 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10005186 [exp] 241 / 7e-77 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 233 / 8e-73 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10008751 [exp] 210 / 2e-64 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 197 / 2e-61 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10025178 [exp] 200 / 6e-61 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10039142 [exp] 199 / 5e-60 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 197 / 7e-60 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10013790 [exp] 191 / 7e-57 AT5G03795 602 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064600 [exp] 256 / 7e-83 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 248 / 9e-80 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 248 / 9e-80 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 246 / 3e-79 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 246 / 6e-79 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.018G025200 [exp] 243 / 8e-78 AT5G11130 530 / 0.0 Exostosin family protein (.1) Potri.T124707 [exp] 232 / 6e-73 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.018G125058 [exp] 232 / 6e-73 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 229 / 5e-72 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.006G064800 [exp] 225 / 3e-70 AT5G20260 556 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10039981 pacid=23173427 polypeptide=Lus10039981 locus=Lus10039981.g ID=Lus10039981.BGIv1.0 annot-version=v1.0 ATGAGGAAGCTATTTAAGATATGGACCTACAAAGAAGGTGAAAAGCCTTTGGTTCATGTTGGGCCGATGAAGAACATCTACTCCATAGAGGGCCAGTTCA TAGACGAACTCGAGAGAGGAAACAGCCCATTTCCAGCCCAAACCCCGGAGGAAGCCCACGTGTTTTTCTTACCCGTCAACATTGCAAACATAGTTAGGTT ACAATCTACACTTATTGTTAAATATCTTCAAGCATTATGTTTATGTATCGTAGATAAAGTATCCATATTGGAACCGAACATCGGGGTCCGACCATTTCAT CTCTCGTGCCATGATTGGGCTCCCGAGCTTCCCAAGTACGACTACGACAGATATAAGAACATTATAAGGGTTTTGTGCAATGCCAACATGTCGGAAGGTT TCCATCCCGTTCGAGATGTGTCGCTGCCCGAGCTCAAGACTCCTCCCGATAGGCTCACACCTTCAATCTTGAAGAACTCTCCCGAGAATCGTGACAAGTT GGCGTTTTTTGTGGGAGGGTCCCACAGTTTACATTCAGGAGGTGTTGTTGGATCAATGGAAGGAGAAAGACGACGATGTCAGAGTCCACGAAACGAGTAT TTGAAAAAGGGAGAAAACTATATGAAGCTAATGAGCAAGAGCAAGTTCTGCCTGTGTCCAAGCGGGTATGAGGTTGCGAGTCTGAGATTGGTGGAGGCGA TTTTTGCAGGATGTGTCCCAGTCGTGTTGTCGGCAAACTATAATCCGCCGTTTAGCAAGGTGTTGAATTGGTTGAAATTTATTCTTGCCATTCCTAATTA A
AA sequence Show only first row Show all	>Lus10039981 pacid=23173427 polypeptide=Lus10039981 locus=Lus10039981.g ID=Lus10039981.BGIv1.0 annot-version=v1.0 MRKLFKIWTYKEGEKPLVHVGPMKNIYSIEGQFIDELERGNSPFPAQTPEEAHVFFLPVNIANIVRLQSTLIVKYLQALCLCIVDKVSILEPNIGVRPFH LSCHDWAPELPKYDYDRYKNIIRVLCNANMSEGFHPVRDVSLPELKTPPDRLTPSILKNSPENRDKLAFFVGGSHSLHSGGVVGSMEGERRRCQSPRNEY LKKGENYMKLMSKSKFCLCPSGYEVASLRLVEAIFAGCVPVVLSANYNPPFSKVLNWLKFILAIPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	0	1
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	1.7	1.0000
AT5G13660			unknown protein		Lus10005963 [exp]	2.4	1.0000
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	3.0	1.0000
AT1G73700			MATE efflux family protein (.1...		Lus10042705 [exp]	4.0	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	5.5	1.0000
					Lus10001790 [exp]	6.0	1.0000
					Lus10006164 [exp]	6.5	1.0000
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	7.4	0.9864
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	7.5	0.9994
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	7.9	0.9937

Compare expression of checked genes

Lus10039981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.