Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G10950 144 / 6e-40 BSD domain-containing protein (.1) AT1G10720 81 / 1e-16 BSD domain-containing protein (.1) AT3G49800 71 / 4e-13 BSD domain-containing protein (.1) AT5G65910 67 / 6e-12 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027706 [exp] 458 / 1e-162 AT2G10950 147 / 9e-42 BSD domain-containing protein (.1) Lus10011556 [exp] 100 / 3e-23 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1) Lus10019271 [exp] 99 / 1e-22 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G125400 [exp] 198 / 5e-60 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.T125207 [exp] 198 / 5e-60 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.006G065200 [exp] 181 / 2e-53 AT2G10950 193 / 1e-58 BSD domain-containing protein (.1) Potri.014G008400 [exp] 106 / 5e-25 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1) Potri.007G006400 [exp] 104 / 1e-24 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1) Potri.014G014200 [exp] 87 / 1e-18 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10039982 pacid=23173457 polypeptide=Lus10039982 locus=Lus10039982.g ID=Lus10039982.BGIv1.0 annot-version=v1.0 ATGTCCTGGGTATTCTTCAACTCTCTGCACTCCGACGATCATCAATCATCGGAGGAGCTGCAGCGTCGTACAGACAGTCTATCAGCCGCCGGAGCGAGCT TTCCGATCATCCACAGTCAGCTACCGGGCGTTTCCAGCTTATTCCCTTCTCCACTTCCGGCGCTACAGTCGCCGAGTTCTGAAACCAGCATGGATTTTTC TGCTCTTCCGCCTCCGCAGGGTTTGGCCGGGGTGCTTAATGATCTGGCCGAAATTGGAGGCAGCTTGAAGGCGGGATTGTCTCTGCTTTCTAGGATTAGA GCAGTCAGCCGAATTTCCAGAATTTTCGATGATAATTTAAAAACAGAGAAAGAGGAAGAAGCAGATGAAGATGATGATGAAGATGAAGATGATTATGTGG CTGGGATAAATGATGAAGTTATTAAGTTCGCTAATCAGATCTCTGAAAGGTCTGCTTGCTGGACCGATTTCCCGTTGTCACTTGAGGATGACTTCAATTT CTCGGATGCTCAGAGACAACATGCTGCAAGTATTGAATATATGGTTCCAAGTCTGCGAGCTCTACGAGTTAGCCTCCAAGGTTACATTACGTCTGAGCAA TTCTGGATGGTGTATTTTATTCTGCTACTTCCAAGACTTGATGAGTATGATATGGATATTCTGTCTTCTTCCCAGATAGTCAACACCCGAAATCGGCTCA TGCAGAAACTTAAAAACAACGAGAAAGCTGAAACCTCTGGAGAGGTGCTGTCCAACTCCCTCAACACATCTCGGGAGATCAGTACCGTAGAAGACGAACA GAATCAGGAACAAAGGTTAAAGGCAGAAGATGCTGGTGCTAGTTCCTCGACGAATAGCAAGAAGGTTGAAGATGAATCTGCTGTCCTGTGCAGTGATGAT GATAGTGTATTTTCAGCAAGACTTTCGACCTCCAGTCATGCTCGCGGAATAAGAGAACCTTCGCCCGGAGGATCGTCGACTGAATGGGTCCAGCTAAATC GTGGCTATGAATCTCGAGGCGGTGGGTCTTCCCAGAGGTCATGGCAGTCGATTCATCGTGGAAAAGATTCAGATGCAGATTCCACCGCCAGTGAATGGCT TCGAGTCTACGAGTCTGATTGA
AA sequence Show only first row Show all	>Lus10039982 pacid=23173457 polypeptide=Lus10039982 locus=Lus10039982.g ID=Lus10039982.BGIv1.0 annot-version=v1.0 MSWVFFNSLHSDDHQSSEELQRRTDSLSAAGASFPIIHSQLPGVSSLFPSPLPALQSPSSETSMDFSALPPPQGLAGVLNDLAEIGGSLKAGLSLLSRIR AVSRISRIFDDNLKTEKEEEADEDDDEDEDDYVAGINDEVIKFANQISERSACWTDFPLSLEDDFNFSDAQRQHAASIEYMVPSLRALRVSLQGYITSEQ FWMVYFILLLPRLDEYDMDILSSSQIVNTRNRLMQKLKNNEKAETSGEVLSNSLNTSREISTVEDEQNQEQRLKAEDAGASSSTNSKKVEDESAVLCSDD DSVFSARLSTSSHARGIREPSPGGSSTEWVQLNRGYESRGGGSSQRSWQSIHRGKDSDADSTASEWLRVYESD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	0	1
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	1.4	0.9656
					Lus10033269 [exp]	2.2	0.9658
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	2.4	0.9634
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	2.8	0.9632
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	3.2	0.9530
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	3.2	0.9614
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	4.0	0.9569
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	4.6	0.9594
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	6.0	0.9613
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	6.7	0.9542

Compare expression of checked genes

Lus10039982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.