Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35430 667 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027703 [exp] 1488 / 0 AT5G35430 726 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G065600 [exp] 1058 / 0 AT5G35430 635 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G126100 [exp] 1055 / 0 AT5G35430 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G126780 [exp] 87 / 4e-17 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 83 / 4e-16 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039983 pacid=23173535 polypeptide=Lus10039983 locus=Lus10039983.g ID=Lus10039983.BGIv1.0 annot-version=v1.0 ATGGACTCGACAGATTCTGCATCTCAACCTTCAGCAGCTGCCGCGCCGGCGAACAGCCGTGTTGAGCCTTCCATGTCATCCAACGGCATGGAGGACGACG CTCTTCTCTCCGCTACTGCTGCTCTCGCTAAGGACGCTGCAATGCACTTCCAGTCCCGGAGATTCTCCGACTGTCTTGATGTTTTGAATCAGCTTGAGCA GAGGAAAGAACACGATCCAAGAGTTCTTCATAATATTGCAATAGCAGAATATTTTCGAGATGGTTGTTCGGATACAAAGAAGTTGCTTGATGTACTAAAC TTTGTGAAGAGGAAAAGTGAGGTCCTTGCTCATGCTCCAGGGGAACCTCCAGAAGCTGCTAACAGTCTTGGGAGCAAACTTGTACCAGGTTCGAGAGGAA GTGTTACGACAACACACCAGTTATCTACTGGAAATACTGGAACTCTTGTTTACATGGATGAATTTGACCCAGCTGTGGCAACGCTAAACATTGCAATCAT CTGGTTCCACCTTCATGAATATACGAAGGCCGTATCAGTTTTAGAACCTCTTTATCACAATATCGCTCCGATTGATGAGACAATAGCTCTTCATGTTTGC TTGTTATCGTTGGACGTCGCACTTGCTTGTCAAGATGCATCCAAGTCTGCTGATGTCCTACTCTATCTAGAAAAATCGTTTGGTATCAATTCTGTGAGTC AAGGAGATAATGGAAGTGTTGCACAGCAACAGTCAACGAACTTAATTGCAAAATCGTCTTCTATTCCAAACAGTTCATTAGTTGTTGATGCACATAGCTC AGATTTAGCAGTTAGCGGGAATGCTTTAGAAAGTTCACTATCTAGGTCGCTGTCGTTGTCAGAGGATTCACTGGAGTATGAAAACATGTTTTCTCTCGAC AGAAGTGGACAGAGTTTAAGAACGCCGCCGGGATTTTCATCTTCTACTGATCTTTCAAGGACCTCTGGGGATAGGTCAACGTCAACCCTTGATTTGAAGC TTAAGTTGCAATTATACAAGGTTCAATTTCTTCTTCTGACTAGGAACTTGAAACATGCTAAACGTGAGGTGAAGCTTGCTATGAACATTGGACGAGGGAG GGATTCATCAATGGCTTTGCTCTTGAAGTCTCAGCTTGAATATGCTCGTGGTAACCATCGGAAAGCTATCAAGCTATTGATGGCATCAAGTAACCGTACA GATATGGGGATTTCTAACATGTTGAACAACCTGGGCTGTATTTACTATCAGCTTGGGAATTACCATACATCATCAGTCCTCTTCTCAAAGGCACTGAGCA GTTGTTCATCTCTTCGGAAGGATAAGCCTCTGAAGCTGTTATCTCTGTCGCAGGATAAATCTCTCTTGATATTGTATAATTGTGGTGTTCAGCACTTGGC ATGCGGGAAGCCTTTGGTGGCTGCTCGTTGCTTTCAGAAGGCAAGTTTGTTATTTTATAACCGGCCTATTCTGTGGCTGCGCCTTGCAGAATGCTGCATT ATGGCTTTGCAGAAAGGTCTTATCAAAGGCGGTCGTGCTTCTTCAAGGAAATCGGAAATCATGGTGCATGTTGTTGGCAAGGGTAAATGGAGGTATCTTG CTGTGGAAGATGGGATTTCAAGAAATGGTTATGTGGATTCTGCTGAAAAGGATGTTCCATCTCTAGGCGATGGTCAACCTGCGCTCTCCATGTCCTTTGC TAGGCAGTGCCTACTCAATGCATTGCATTTATTGGACTACTCCGAACTAAACCATCTCAAGTATGGATTACCGTCCTCTTTCTCTATGGAGGAAAGTGAA TCAAGTGATGCAGTTAAACACTCGAATCATAAGAACTTGACGAGTTTCGATACCAAAGGCTCAGCAGGAGGCTTGATTCAGATGAATGCAAATGGTGATG TGAGGGAACAGAAAGGAGGAGGAACTAGTCAGGATATTATGCAGAATTCAATATCTTACTATGAAGATGTTCATCGACGAGAAAACCAGATGATTAAGCA AGCTCTTCTAGCAAACTTGGCATATGTTGAGTTGGAACTAGAGAATCCTGATAAGGCATTGTCCAGGGCAATGTCTCTTTTCGAACTGCCAGAGTGTTCG AGAATTTTCGTCTTTCTTGGACACTTATATGCAGCAGAGTCACTCTGCTTACTGAACAAGCCAAAAGAAGCCGCGGAGCATGTTTCTATTTATTTGTCTG GAGGGGACAACGTGGAGTTACCGTTCAAGCTAGAGGATTTTGAGCAGTTGCAAGTAGAGAAAACCTTGGATTGCGAGGACTCAAATGGACAAAATAAGGC GGAATATCAGAGCGTTGCATTCCTGAAGCCGAATGAGGCACGTGGAACCCTTTATGCGAATTTTGCAGCATTGTGCGCAATGCAAGGAGAGATGGAGCGA GCCCAGCATTTTGTGACACGAGCATTGTCCCTCATCCCGAGCAGCAGGGAAGCAACATTGACAGCAGTGTACTTGGACCTATTACTAGGTAAGTCGGAGT CGGCGGTTACAAGGTTAAGGCAATGCAACCAGGTACGGTTCGTTTCAGGGAGTGTAGAATTGAGTAAATCGTGA
AA sequence Show only first row Show all	>Lus10039983 pacid=23173535 polypeptide=Lus10039983 locus=Lus10039983.g ID=Lus10039983.BGIv1.0 annot-version=v1.0 MDSTDSASQPSAAAAPANSRVEPSMSSNGMEDDALLSATAALAKDAAMHFQSRRFSDCLDVLNQLEQRKEHDPRVLHNIAIAEYFRDGCSDTKKLLDVLN FVKRKSEVLAHAPGEPPEAANSLGSKLVPGSRGSVTTTHQLSTGNTGTLVYMDEFDPAVATLNIAIIWFHLHEYTKAVSVLEPLYHNIAPIDETIALHVC LLSLDVALACQDASKSADVLLYLEKSFGINSVSQGDNGSVAQQQSTNLIAKSSSIPNSSLVVDAHSSDLAVSGNALESSLSRSLSLSEDSLEYENMFSLD RSGQSLRTPPGFSSSTDLSRTSGDRSTSTLDLKLKLQLYKVQFLLLTRNLKHAKREVKLAMNIGRGRDSSMALLLKSQLEYARGNHRKAIKLLMASSNRT DMGISNMLNNLGCIYYQLGNYHTSSVLFSKALSSCSSLRKDKPLKLLSLSQDKSLLILYNCGVQHLACGKPLVAARCFQKASLLFYNRPILWLRLAECCI MALQKGLIKGGRASSRKSEIMVHVVGKGKWRYLAVEDGISRNGYVDSAEKDVPSLGDGQPALSMSFARQCLLNALHLLDYSELNHLKYGLPSSFSMEESE SSDAVKHSNHKNLTSFDTKGSAGGLIQMNANGDVREQKGGGTSQDIMQNSISYYEDVHRRENQMIKQALLANLAYVELELENPDKALSRAMSLFELPECS RIFVFLGHLYAAESLCLLNKPKEAAEHVSIYLSGGDNVELPFKLEDFEQLQVEKTLDCEDSNGQNKAEYQSVAFLKPNEARGTLYANFAALCAMQGEMER AQHFVTRALSLIPSSREATLTAVYLDLLLGKSESAVTRLRQCNQVRFVSGSVELSKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10039983 [exp]	0	1
AT5G65950			unknown protein		Lus10041289 [exp]	3.9	0.8926
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	5.0	0.9039
AT3G22270			Topoisomerase II-associated pr...		Lus10027297 [exp]	7.1	0.8666
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10040315 [exp]	7.5	0.8939
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	8.9	0.8920
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10023437 [exp]	9.9	0.8805
					Lus10014954 [exp]	20.0	0.8834
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	21.8	0.8834
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	25.1	0.8687
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	27.7	0.8675

Compare expression of checked genes

Lus10039983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.