Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56150 1091 / 0 ATTIF3C1, ATEIF3C-1, TIF3C1, EIF3C eukaryotic translation initiation factor 3C (.1.2) AT3G22860 865 / 0 ATTIF3C2, ATEIF3C-2, TIF3C2 EUKARYOTIC INITIATION FACTOR 3C-2, eukaryotic translation initiation factor 3 subunit C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027702 [exp] 1543 / 0 AT3G56150 1188 / 0.0 eukaryotic translation initiation factor 3C (.1.2) Lus10019181 [exp] 77 / 3e-17 ND / Lus10029529 [exp] 79 / 7e-15 ND / Lus10016136 [exp] 76 / 2e-14 ND / Lus10024465 [exp] 69 / 1e-13 ND / Lus10038134 [exp] 68 / 7e-13 ND / Lus10008258 [exp] 66 / 1e-11 ND / Lus10000977 [exp] 67 / 3e-11 ND / Lus10013147 [exp] 64 / 4e-11 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245100 [exp] 1194 / 0 AT3G56150 1079 / 0.0 eukaryotic translation initiation factor 3C (.1.2) Potri.002G016900 [exp] 1183 / 0 AT3G56150 1095 / 0.0 eukaryotic translation initiation factor 3C (.1.2) Potri.016G063500 [exp] 1168 / 0 AT3G56150 1017 / 0.0 eukaryotic translation initiation factor 3C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05470 [flax] [poplar] eIF-3c_N Eukaryotic translation initiation factor 3 subunit 8 N-terminus CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10039984 pacid=23173400 polypeptide=Lus10039984 locus=Lus10039984.g ID=Lus10039984.BGIv1.0 annot-version=v1.0 ATGCTCCTAAAGGCCGACCTCGTGCTACAAAGACTGACCGTCGAAATCCTTCTTGGCATGAGCATACAAGTGGGCAGTGTACTCCTCCCAAGAATAGAGG TAGCTCGACCAGATCTACCCCTTCGAAGAACGGTACACCTTCAAACACTGGCTCGACTCCAGGCTCATCACTTCCAACTAGGGGCTGGAAGCGATTCAGA AGACCCTTCAGAGCAGAGTGATTTTGAAGACGAGATTGAAGAGGGAATCATTGGAGGTGATCCCGCTGCGGTCGATGCACAGAATCGGTATCTTAGGACT ACCAACAGCGACAGCGATGATTCTGATGGGCAGAAGCGCGTCGTTAGGTCGGCAAAAGACAAGCGTTTTGAGGAGATGTCCTCCACTCTTGAGCAGATCA AGAACGCTATGAAGATCAATGATTGGGTCAGCCTGCAGGAAAGCTTTGACAAGATAAACAAACAGCTCGAGAAAGTCATGCGTGTAACTGAGTCTGTGAA GGTACCAAACCTTTACCTGAAGGCCTTGGTAATGCTGGAGGATTTTTTGAACCAGGCTTTGGCAAACAAGGAGGCCAAAAAGAAGATGAGCAGTAGTAAT GCCAAGGCTTTGAACTCCATGAAGCAGAAGCTTAAGAAGAACAACAAACAGTACGAAGAGCTTATTGTGAAATATAGGGAAAAACCTGAGAGTGAAGAGG AGAGTAACGAGGAAGTGGGAGATACTACTTCTGATGATGAAGTGTCTGTAATGTCTAATGACGAGATTCCTGCAATATCTGATGAGTCTGAAGATACCGA TGACGAGAAGCCGGATGAAGGTGAGGGCGGATGGGAGAAGATGTTGAGTAAGAAGGAGAAACTCATGGATAAGCAGTTCATGAAGGATCCCAGCGAAATT ACTTGGGAGGTTGTGAATAAAAAATTTAAAGAAGTTGTTGCAGCCCGTGGTAGGAAAGGCACTGGGAGGTTTGAACAGGTTGAGCAGCTAACTTTTTTGA CAAAGGTTGCGAAGACACCAGCACAAAAGCTTGAAATTCTGTTTAGTGTTGTGTCTGCTCAGTTTGACGTGAAACCAGGGCTTAATGGCCACATGCCTAT AAATGTTTGGAAGAAGTGTGTGCTGAATATGCTGGTTATCCTTGACATTCTCTTCCAGCATCGTAATATCTTAGTAGATGAAACAATCGAGCAAGGTGAG ACCGAGTCTCAGAAGGGAGCAGACCATGAATCGCCCATCTGCATGTGGGGAAACTTGCTGGGCTCCCTTGAGAGAATCGATATTGAGTTTTTCAAGAGCC TGCAATGCATTGATCCACATACTCGGGAGTATGTTGATAGACTGCAGGATGAACCATTGTTTTTGGTTCTTGCTCAAAATGTTCAGGAGTTCTTTGAGCG GGCTGGAGACTATAAAGCAGCCTCTAAGGTTGCTTTGAGGCGTGTCGAGCTCGTGTATTACAAGCCACAAGCTGTTTATGATGCTATGAGAAATCTGGCT GAACAAACAGCAGATGGAGACAATGGTGAAGATAAGGCTGATGACAGTAGAGGTCCATCTCCATTTGTTGCTGTTTCCGAGGTTTTGCCTCGGAAGCCCA CTTTCCCAGAGAACAGCAGATCGATGATGGACATGTTGGTCTCTCTGATTTACAAATATGGAGATGACCGCACCAAAGCGCGTGCTATGCTTTGTGATAT CTACCACCATGCTCTCCTGGATGAGTTCTCCATTGCTCGTGACTTGCTGTTGATGAGTCACTTGCAGGACAACATTCAGCACTTGGACATTATGACCCAG ATCCTATTTAACAGGGCCATGGCTCAGCTTGGTTTGTGTGCATTTAGGGCTGGACTAATCACTGAAGGACATGGTTGTCTCTCTGAACTGTATTCTGGTG GGAGGGTGAAGGAGTTGCTTGCCCAAGGTGTATCCCAAAGTCGATATTATGAGAAGACCCCAGAGCAGGAAAGGCTGGAAAGGAGGCGTCAGATGCCATA CCATATGCACATAAATCTCGAGCTTCTGGAAGCTGTACATCTCATCTGTGCAATGCTCCTTGAAGTTCCAAACATGGCAGCCAACAGCCACGATGTAAAG CGCAGAGTCATAAGCAAGAATTTCAGGCGTTTGCTTGAGATCAGTGAGAGGCAAACTTTCACTGGCCCTCCTGAAAACGTAAGAGACCATGTCATGGCTG CAACCAGAGCTCTTACTAAGGGAGACTTCCTCAAAGCCTTTGAAGTAATCCAGTCCCTCGATATCTGGAGACTTTTGCTAAACAAAGAGAATGTTTTGGA GATGCTGAAGTCCAAGATTAAGGAAGCAGCTCTCAGGACCTATCTGTTGACCTATTCTGTGTCGTACTGCTCTCTGAGCTTGGCACAGCTGATGTCAATG TTTGACTTGTCAAGAGCTCAAGCTCACAGCAATGTGAGCAAGATGATGATCAATGAGGAGCTGTATGCTAGCTGGGACCAGCCGACAGGGTGCATAGTCT TCCATGACGTTGAGTATTCGAGGCTGCAGACTTTGGCGTTTCAGCTAACGGAGAAGCTTTCAATCCTGGCCGACAGCAATGAAAGGGCAATGGAAACTGG CATTGGAGGCAGTGGTATGGAGCTGCCGGCAAGGAGGAGAGATGGTGGTGGGCAGGACTATGCCAACGTTGCGGCTGGTAAGTGGCAGGACAATAATTCC TACTACAACAACAATCAACAGGGACGAGGACGTTCGGGGAGATTGGGACAGGGTTTGAGAGGCGGGTATGGTAGGGGTAGCCAGGTAAGAGGAGCGGGTG GGGCTCGTTATCAAGATTCATCAGCTTATTATGGAGGTGGATCGAGAAGGTCTGCCAGCTCAGCAGTTAGGGGTTCTCAGATGGATGGTTCTACCCGTAT GGTCAATCTGAATCGTGGAGTTCACGCATAA
AA sequence Show only first row Show all	>Lus10039984 pacid=23173400 polypeptide=Lus10039984 locus=Lus10039984.g ID=Lus10039984.BGIv1.0 annot-version=v1.0 MLLKADLVLQRLTVEILLGMSIQVGSVLLPRIEVARPDLPLRRTVHLQTLARLQAHHFQLGAGSDSEDPSEQSDFEDEIEEGIIGGDPAAVDAQNRYLRT TNSDSDDSDGQKRVVRSAKDKRFEEMSSTLEQIKNAMKINDWVSLQESFDKINKQLEKVMRVTESVKVPNLYLKALVMLEDFLNQALANKEAKKKMSSSN AKALNSMKQKLKKNNKQYEELIVKYREKPESEEESNEEVGDTTSDDEVSVMSNDEIPAISDESEDTDDEKPDEGEGGWEKMLSKKEKLMDKQFMKDPSEI TWEVVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVKPGLNGHMPINVWKKCVLNMLVILDILFQHRNILVDETIEQGE TESQKGADHESPICMWGNLLGSLERIDIEFFKSLQCIDPHTREYVDRLQDEPLFLVLAQNVQEFFERAGDYKAASKVALRRVELVYYKPQAVYDAMRNLA EQTADGDNGEDKADDSRGPSPFVAVSEVLPRKPTFPENSRSMMDMLVSLIYKYGDDRTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDNIQHLDIMTQ ILFNRAMAQLGLCAFRAGLITEGHGCLSELYSGGRVKELLAQGVSQSRYYEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANSHDVK RRVISKNFRRLLEISERQTFTGPPENVRDHVMAATRALTKGDFLKAFEVIQSLDIWRLLLNKENVLEMLKSKIKEAALRTYLLTYSVSYCSLSLAQLMSM FDLSRAQAHSNVSKMMINEELYASWDQPTGCIVFHDVEYSRLQTLAFQLTEKLSILADSNERAMETGIGGSGMELPARRRDGGGQDYANVAAGKWQDNNS YYNNNQQGRGRSGRLGQGLRGGYGRGSQVRGAGGARYQDSSAYYGGGSRRSASSAVRGSQMDGSTRMVNLNRGVHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10039984 [exp]	0	1
AT1G50920			Nucleolar GTP-binding protein ...		Lus10027370 [exp]	1.0	0.8968
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10008670 [exp]	2.4	0.8797
AT2G46290			Transducin/WD40 repeat-like su...		Lus10021857 [exp]	3.2	0.8918
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10032704 [exp]	5.7	0.8796
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	9.2	0.8737
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10032176 [exp]	12.1	0.8562
AT1G09640			Translation elongation factor ...		Lus10007150 [exp]	14.0	0.7618
AT5G09510			Ribosomal protein S19 family p...		Lus10018777 [exp]	15.6	0.8506
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10031970 [exp]	16.2	0.8423
AT2G38550			Transmembrane proteins 14C (.1...		Lus10025221 [exp]	18.5	0.8562

Compare expression of checked genes

Lus10039984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.