Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07490 132 / 3e-39 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT4G12860 125 / 9e-37 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT1G05990 124 / 4e-36 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT3G59440 124 / 9e-36 Calcium-binding EF-hand family protein (.1) AT4G03290 123 / 1e-35 EF hand calcium-binding protein family (.1) AT2G43290 121 / 2e-34 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT1G18210 98 / 1e-25 Calcium-binding EF-hand family protein (.1.2) AT5G37770 95 / 1e-24 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G73630 91 / 6e-23 EF hand calcium-binding protein family (.1) AT3G43810 82 / 5e-20 CAM7 calmodulin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027701 [exp] 315 / 2e-110 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10006644 [exp] 238 / 7e-80 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10038088 [exp] 236 / 5e-79 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10009564 [exp] 127 / 3e-37 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10009059 [exp] 94 / 3e-24 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10031345 [exp] 94 / 7e-24 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10018012 [exp] 92 / 2e-23 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 88 / 6e-21 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10014050 [exp] 86 / 1e-20 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127100 [exp] 202 / 5e-66 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G065900 [exp] 199 / 1e-64 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G239100 [exp] 136 / 5e-41 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.017G029700 [exp] 126 / 4e-36 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 125 / 5e-36 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.015G039500 [exp] 99 / 6e-26 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.012G048200 [exp] 97 / 1e-25 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.017G126200 [exp] 92 / 1e-23 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.010G107100 [exp] 93 / 2e-23 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 92 / 4e-23 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10039986 pacid=23173447 polypeptide=Lus10039986 locus=Lus10039986.g ID=Lus10039986.BGIv1.0 annot-version=v1.0 ATGATCACCGCCGCACTACTACTGTTGCTCCTCTTCATCGCCGGAGTGTTCAACATCAGTTCCTACTTTCCTTCCAAGAAGTTCTACGCCCGTCTCCACT CCCTCTTCCTCGCCGCCACCACGAAGGCGGAGACGGATGAAATCAAATCCGCTCCAATGAAGCAGGAAATACGAAATTCGGTAGCGGAGGACGAGATGAC GAGCGTGTTTGCAACGTTCGACAAGAACGGGGACGGATTCATCACGAAGCAGGAGCTGAAGGAATCGCTGAAGAACATCCGGATCTCCGTCACGGAGAAG GAAGCCGAGGAGATGGTGGTGAAGGTGGATTCGAACGGCGACGGGCTAATTGACTTGGAGGAGTTCAAAATCCTTTGCCGGAACAGGGATAACGATGGAT TGATCACAGTGGAGGAGCTTGGATCGGTGTTGTCATCGTTAGGGATGAATGAAGGGAAGAGGATGGAGGACTGCAAGGAGATGATAAGGAGAGTTGATGT GGACGGCGACGGGATGGTGAATTTCGATGAATTCAAGACGATGATGTCGAGGAACAATGATTTTGGTAGTAGATCGGAAATGGAATATGTACTTACTTTA GCAAGTTAG
AA sequence Show only first row Show all	>Lus10039986 pacid=23173447 polypeptide=Lus10039986 locus=Lus10039986.g ID=Lus10039986.BGIv1.0 annot-version=v1.0 MITAALLLLLLFIAGVFNISSYFPSKKFYARLHSLFLAATTKAETDEIKSAPMKQEIRNSVAEDEMTSVFATFDKNGDGFITKQELKESLKNIRISVTEK EAEEMVVKVDSNGDGLIDLEEFKILCRNRDNDGLITVEELGSVLSSLGMNEGKRMEDCKEMIRRVDVDGDGMVNFDEFKTMMSRNNDFGSRSEMEYVLTL AS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10039986 [exp]	0	1
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10036465 [exp]	4.2	0.8485
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10006716 [exp]	7.1	0.8305
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	7.6	0.8486
AT3G44670			Disease resistance protein (TI...		Lus10008525 [exp]	13.0	0.8081
AT2G17080			Arabidopsis protein of unknown...		Lus10012368 [exp]	13.7	0.8110
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	14.5	0.8097
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	16.6	0.8090
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031833 [exp]	16.9	0.7918
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10020062 [exp]	19.0	0.7822
AT4G11170			Disease resistance protein (TI...		Lus10010222 [exp]	23.5	0.8063

Compare expression of checked genes

Lus10039986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.