Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G32440 251 / 4e-83 Ubiquitin system component Cue protein (.1.2.3) AT1G80040 172 / 1e-52 unknown protein AT5G02510 99 / 5e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027699 [exp] 521 / 0 AT5G32440 253 / 8e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10027700 [exp] 516 / 0 AT5G32440 262 / 2e-87 Ubiquitin system component Cue protein (.1.2.3) Lus10039988 [exp] 512 / 0 AT5G32440 272 / 1e-91 Ubiquitin system component Cue protein (.1.2.3) Lus10025332 [exp] 146 / 3e-42 AT5G02510 152 / 4e-46 unknown protein Lus10024410 [exp] 142 / 1e-40 AT5G02510 149 / 8e-45 unknown protein Lus10014293 [exp] 128 / 1e-35 AT1G80040 129 / 1e-36 unknown protein Lus10026000 [exp] 127 / 4e-35 AT1G80040 121 / 1e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066000 [exp] 372 / 1e-130 AT5G32440 241 / 3e-79 Ubiquitin system component Cue protein (.1.2.3) Potri.018G127200 [exp] 369 / 4e-129 AT5G32440 287 / 1e-97 Ubiquitin system component Cue protein (.1.2.3) Potri.005G121100 [exp] 145 / 8e-43 AT1G80040 130 / 2e-37 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Lus10039987 pacid=23173551 polypeptide=Lus10039987 locus=Lus10039987.g ID=Lus10039987.BGIv1.0 annot-version=v1.0 ATGTCTGCCATAGTGGGCGGAAAGAGATCTTTCTTCGAAGAATTGAACATCACAAGCTCGCCGGTTACCAAAAGAATCCGTTGTTCTTCGTCTTCCCCTG TTCGTTTCTCCCCAACCAGAACCCAATCCTCTGCAGCCCTCCCTTCTGCTTCTTCTACTCCTTCTTCTGCACATTTTATCGAACAGCTTGCTGCTATTTT CCCTGAAATGGACAAGGAGCTCCTTGAAAGAGCACTTGCAGAATGTGGGGAGGATTTGGATTTGGCCATAAGAAGCTTGAATGAACTTCGCTTAGGGTCG TCCGATAAGAATGTAGGTTGTGATGCTTGCAAATGTGACGGGCTCGTTGATACTGATGGTAATGTTCAAGGCACTGCACCAACTGATCCTGGGAATCCTT CAGTTTCATCACATCTTCAAATGGACGGTGCAGAGTGGGTGGAACTCTTCGTTAGAGAAATGACTAGTGCTACCAACATGGATGATGCGAAAGCACGTGC TTCAAGAGCTCTAGAAGCTCTAGAGAAGTCCATCTATGCGCGTGCAGGAGCAGAAGCGGTGAAGAACTTCAAAATGGAAAATGTGAAGTTGAAGGAGCAA GTCCAATTGCTCATACACGAGAACACAATCCTCAAGCGAGCCGTATCAATCCAACATGAGCGACAGAAGGAGTTTGAAGACAGAAACCAGGAACTTCAGC AGTTGAAGCAGCTAGTGGCGCAGTACCAGGACCAATTGAGAACCTTGGAGGTAGGAACTGCTAATTCTTCAAATCATTTCAATGATGCTAGTAGAGCTGT CTCTTCTCCGATCAAGGAGGTAAACAACTATGCATTGTCAATGCACCTGAAGCAGGCGCAGCAAAGCAGCTCAATTCCAGGGCGTTTCCATCCTGATGTG TTCTAA
AA sequence Show only first row Show all	>Lus10039987 pacid=23173551 polypeptide=Lus10039987 locus=Lus10039987.g ID=Lus10039987.BGIv1.0 annot-version=v1.0 MSAIVGGKRSFFEELNITSSPVTKRIRCSSSSPVRFSPTRTQSSAALPSASSTPSSAHFIEQLAAIFPEMDKELLERALAECGEDLDLAIRSLNELRLGS SDKNVGCDACKCDGLVDTDGNVQGTAPTDPGNPSVSSHLQMDGAEWVELFVREMTSATNMDDAKARASRALEALEKSIYARAGAEAVKNFKMENVKLKEQ VQLLIHENTILKRAVSIQHERQKEFEDRNQELQQLKQLVAQYQDQLRTLEVGTANSSNHFNDASRAVSSPIKEVNNYALSMHLKQAQQSSSIPGRFHPDV F

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G32440			Ubiquitin system component Cue...		Lus10039987 [exp]	0	1
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10001259 [exp]	9.5	0.8644
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	16.3	0.8776
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Lus10018502 [exp]	16.9	0.8745
AT1G31690			Copper amine oxidase family pr...		Lus10013356 [exp]	23.8	0.8760
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Lus10000921 [exp]	30.0	0.8601
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10003539 [exp]	30.9	0.8557
AT1G05270			TraB family protein (.1)		Lus10015104 [exp]	31.2	0.8311
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Lus10008061 [exp]	32.6	0.8157
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Lus10005226 [exp]	34.9	0.8361
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	36.5	0.8704

Compare expression of checked genes

Lus10039987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.