Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G32440 268 / 3e-90 Ubiquitin system component Cue protein (.1.2.3) AT1G80040 184 / 3e-57 unknown protein AT5G02510 110 / 9e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027700 [exp] 519 / 0 AT5G32440 262 / 2e-87 Ubiquitin system component Cue protein (.1.2.3) Lus10039987 [exp] 512 / 0 AT5G32440 255 / 1e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10027699 [exp] 504 / 0 AT5G32440 253 / 8e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10025332 [exp] 158 / 7e-47 AT5G02510 152 / 4e-46 unknown protein Lus10024410 [exp] 154 / 2e-45 AT5G02510 149 / 8e-45 unknown protein Lus10014293 [exp] 140 / 2e-40 AT1G80040 129 / 1e-36 unknown protein Lus10026000 [exp] 135 / 1e-38 AT1G80040 121 / 1e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127200 [exp] 392 / 8e-139 AT5G32440 287 / 1e-97 Ubiquitin system component Cue protein (.1.2.3) Potri.006G066000 [exp] 390 / 7e-138 AT5G32440 241 / 3e-79 Ubiquitin system component Cue protein (.1.2.3) Potri.005G121100 [exp] 159 / 4e-48 AT1G80040 130 / 2e-37 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Lus10039988 pacid=23173439 polypeptide=Lus10039988 locus=Lus10039988.g ID=Lus10039988.BGIv1.0 annot-version=v1.0 ATGTCTGCCATAGTGGGCGGAAAGAGATCTTTCTTCGAAGAGTTGAACATCACAAGCCCGCCGGTTACCAAAAGAATCCGTTGTTCTTCGTCTTCCCCTG TTCGTTTCTCCCCAACCAGAACCCAATCCTCTGCAGCCCTCTCTTCTGCTTCTTCTACTCCTTCTTCTGCACATTTTATCGAACAGCTTGCTGCTATTTT CCCTGAAATGGACAAGGAGCTCCTTGAAAGAGCACTTGCAGAATGTGGGGAGGATTTGGATTTGGCCATAAGAAGCTTGAATGAACTTCGCTTAGGGTCG TCCGATAAGAATGTAGGTTGTGATGCTTGCAAATGTGACGGGCTCGTTGATACTGATGGTAATGTTCAAGGCACTGCACAAACTGATCCTGAGTTCCCAG CGGCTGAGAATCCTTCAGTTTCATCACATCTTCAAATGGACGGTGCGGAGTGGGTGGAGCTATTTGTTAGAGAAATGACTAGCGCTACCAACATGGATGA TGCGAAAGCACGTGCTTCAAGAGCGCTAGAAGCTCTAGAGAAGTCCATCTATGCACGTGCAGGAGCAGAAGCGGTGAAGAACTTTAAAATGGAAAATGTG AAGTTGAAGGAGCAAGTCCAATTGGTCATACATGAGAACACAATCCTCAAGCGAGCCGTATCAATCCAACATGAGCGACAGAAGGAGTTTGAAGACAGAA ACCAGGAACTTCAGCAGTTGAAGCAGCTAGTGGCGCAGTACCAGGACCAATTGAGAACCTTGGAGGTAAACAACTATGCATTGTCAATGCACCTGAAGCA GGCGCAGCAAAGCAGCTCAATTCCAGGGCGTTTTCATCCTGATGTGTTCTAA
AA sequence Show only first row Show all	>Lus10039988 pacid=23173439 polypeptide=Lus10039988 locus=Lus10039988.g ID=Lus10039988.BGIv1.0 annot-version=v1.0 MSAIVGGKRSFFEELNITSPPVTKRIRCSSSSPVRFSPTRTQSSAALSSASSTPSSAHFIEQLAAIFPEMDKELLERALAECGEDLDLAIRSLNELRLGS SDKNVGCDACKCDGLVDTDGNVQGTAQTDPEFPAAENPSVSSHLQMDGAEWVELFVREMTSATNMDDAKARASRALEALEKSIYARAGAEAVKNFKMENV KLKEQVQLVIHENTILKRAVSIQHERQKEFEDRNQELQQLKQLVAQYQDQLRTLEVNNYALSMHLKQAQQSSSIPGRFHPDVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G32440			Ubiquitin system component Cue...		Lus10039988 [exp]	0	1
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	1.7	0.9038
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	4.7	0.8653
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	5.7	0.8528
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	6.3	0.8527
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	7.5	0.8588
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10037759 [exp]	8.1	0.8507
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018287 [exp]	10.6	0.8433
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	11.6	0.8431
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10000763 [exp]	12.0	0.8393
AT1G15060			Uncharacterised conserved prot...		Lus10043481 [exp]	12.2	0.8039

Compare expression of checked genes

Lus10039988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.