Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12646 288 / 1e-97 PLATZ transcription factor family protein (.1) AT3G60670 187 / 4e-58 PLATZ transcription factor family protein (.1) AT1G31040 172 / 2e-52 PLATZ transcription factor family protein (.1) AT1G76590 127 / 3e-35 PLATZ transcription factor family protein (.1) AT1G21000 126 / 2e-34 PLATZ transcription factor family protein (.1.2) AT4G17900 124 / 5e-34 PLATZ transcription factor family protein (.1.2) AT1G32700 122 / 3e-33 PLATZ transcription factor family protein (.1.2) AT1G43000 116 / 3e-31 PLATZ transcription factor family protein (.1) AT5G46710 116 / 7e-31 PLATZ transcription factor family protein (.1) AT2G01818 115 / 7e-31 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008814 [exp] 509 / 0 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10008031 [exp] 313 / 2e-107 AT2G12646 294 / 1e-100 PLATZ transcription factor family protein (.1) Lus10038103 [exp] 305 / 7e-104 AT2G12646 289 / 1e-98 PLATZ transcription factor family protein (.1) Lus10015881 [exp] 183 / 2e-56 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 180 / 3e-55 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10036226 [exp] 145 / 1e-42 AT1G31040 191 / 3e-61 PLATZ transcription factor family protein (.1) Lus10020337 [exp] 130 / 2e-35 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2) Lus10000952 [exp] 129 / 2e-35 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10002700 [exp] 129 / 3e-35 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G116000 [exp] 322 / 3e-111 AT2G12646 318 / 2e-110 PLATZ transcription factor family protein (.1) Potri.006G060500 [exp] 322 / 5e-111 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.001G159200 [exp] 186 / 7e-58 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 182 / 8e-56 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.014G059300 [exp] 178 / 9e-55 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 168 / 1e-50 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.003G092800 [exp] 130 / 2e-36 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 126 / 5e-35 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.002G002200 [exp] 124 / 4e-34 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 124 / 6e-34 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10039989 pacid=23173547 polypeptide=Lus10039989 locus=Lus10039989.g ID=Lus10039989.BGIv1.0 annot-version=v1.0 ATGGTTGGTGATCTAGCTAGCTATCCTCTTTCAAAATTCTTCCTAGGGTTTGGTTTTTGTTATGTTTTACCCTTTTTGTTATCTCTAATTTTGGGTTATG CATGGAAAACACAGGGAATTCACCAGAAGCCGGCATGGTTGGAAGAGTTGTACAATCAGCAGTTCTTCACACCATGTTCGTACCACGAATGCTCTAAGAA GAACGAGAAGAACGTGTACTGTCTCGACTGTTGCACTAGCATCTGCCCTCACTGCGTCCTTTCTCACCGCCTCCACAGGTTGCTTCAAATTCGCCGTTAT GTCTACCATGACGTTGTTCGACTAGAAGACCTCGAAAACCTCGTTGACTGCACTAACGTTCAGGCTTACACAATCAATAATTCAAAAGTGGTGTTCATCA AGAAGAGGCCTCAAAACAGGCAATTGAAAGGCTCCGGGAACAACTGCACTTCATGTAATAGAGGCCTGCAGGAGCCTTTCATCCATTGCTCCCTCGGCTG CAAGGTGGAATTTGCGTTGAAACATTACAGTGACTTGAGCCGATTCCTAAGGAAATGCAAGACATTAACACTTGGGCCGGATTTCTTAATCCCTCAAGAC AACATGGGATACGACGATATGATGACTAATGATGCCAACCACTCCTCAATTGTCGACTACGATGACCCTCTGAGCTGGTCCTCTGGTTCTGCTGGCTCCA GTTCGTTTTCATATTCCTCGGGCGGTTCTGATAACTTCAGCACAATGCACAATATGTGTATCGAAAAAGTAGTGCGTAAGAAGAGAAGTGAATTGGTTTA CAATTGGTCTAGATCGACGACAACTACAACAAATCATAGTTACAGGCAGCACCAGGGACATGATGATTGCAAGGACTCCGATGAAGATATGACTACCAAT ATGAGCCGTCGGAAAGGAGTGCCTCAACGGTCTCCTTTGTGTTAA
AA sequence Show only first row Show all	>Lus10039989 pacid=23173547 polypeptide=Lus10039989 locus=Lus10039989.g ID=Lus10039989.BGIv1.0 annot-version=v1.0 MVGDLASYPLSKFFLGFGFCYVLPFLLSLILGYAWKTQGIHQKPAWLEELYNQQFFTPCSYHECSKKNEKNVYCLDCCTSICPHCVLSHRLHRLLQIRRY VYHDVVRLEDLENLVDCTNVQAYTINNSKVVFIKKRPQNRQLKGSGNNCTSCNRGLQEPFIHCSLGCKVEFALKHYSDLSRFLRKCKTLTLGPDFLIPQD NMGYDDMMTNDANHSSIVDYDDPLSWSSGSAGSSSFSYSSGGSDNFSTMHNMCIEKVVRKKRSELVYNWSRSTTTTTNHSYRQHQGHDDCKDSDEDMTTN MSRRKGVPQRSPLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	0	1
					Lus10005096 [exp]	1.0	0.9634
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	1.4	0.9628
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	3.9	0.9355
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	3.9	0.9436
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	5.5	0.9310
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031285 [exp]	7.4	0.9193
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	7.5	0.9369
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	9.5	0.8944
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10030478 [exp]	9.8	0.9188
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	10.2	0.9224

Compare expression of checked genes

Lus10039989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.