Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017044 [exp] 176 / 1e-52 ND / Lus10003428 [exp] 176 / 1e-52 ND / Lus10005604 [exp] 171 / 3e-51 ND / Lus10032803 [exp] 169 / 3e-50 ND / Lus10035107 [exp] 159 / 9e-48 ND / Lus10040057 [exp] 157 / 9e-47 ND / Lus10022127 [exp] 155 / 6e-46 ND / Lus10008258 [exp] 152 / 7e-44 ND / Lus10013147 [exp] 150 / 7e-44 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039990 pacid=23173531 polypeptide=Lus10039990 locus=Lus10039990.g ID=Lus10039990.BGIv1.0 annot-version=v1.0 ATGGAATCTAAACACTCGTCGCTGAAGTCGTGGTACAACTCTTCGAATCAGGCTGTTGATACTCTCTTTGAGAGCTACCATGCTTCTATCGATGGACAGG TCATTAAGATTCAGAAGGTATACCATTACGCGCAGAAACCACCATTCGTATATCTCAATAATGCAGTCTCGGCGTGGGCAATTGAGATTCTGACAGAGGA GCTCTCGAAGTACATTCCAGAGGGTTTGCACGACATGCTGAGTGACGTGTTTAACCCACACGGTGATGGAAATTGTGGATTTAGGTGCATTTTAAATATA GTCAACCCCATCGACGATAGTCAGTATGTGGACATCCGGAGACAACTAATGGAACATGTTACTTTGAATTGGTATGATCTCTATAATAACATGTATAACA CGGACTTGAACGACGTCATTCACCGGTTAGGTTGGCCGTGGGAGACACCATGTGATGATCGATGGTGGTTCTGGAACATGGATCTACTAGGCCATGAAAT TACACACGGAGGTCAACTCAATGGGTCCGTTTACTATTTGACACCCAATTTCCTTCTCCCCTTTGCGGTCGTCACTAAACTTATCCCTCTTTCTCGTGAC CTAGCGGTTGCCGCTCCACTATCTCTTCTTCAAATTTTATGCTATCTCAATTCTCTTATGATCGGTCGCCTCCTCTTCCAACCCGATGATGGTGATGACC GCCCCCTTTCCCGGTCGTCAATACTACTTCCTTTTTCAGACGATCTATCTCTAGCAAGCAATAAGAAATCCGCAAAGAAACCAAACCTAAAGATCTCTCA GGCTAATCTCTTCGACGAAGGTTCTCGACCTATGCTCGCGATTGAGTTGATAAAGAGTCGCGACTTGCAACTCATAACTCACATAAACCAAAGTCCTAGA AGTTCCTTCGACAAACAACGAGCTCTTTCAGGAGGTGTAGAAGGTAGAGCTGATGAATCCCATATGCGGATTAGAGGGAATAGAGAAAGCTTCAGAAGGT CATTCAGGACAGGCGGCTTGAGCTCTGGGACGGCAACTTCAGATCAAACTCTACCGGGAAGCTAA
AA sequence Show only first row Show all	>Lus10039990 pacid=23173531 polypeptide=Lus10039990 locus=Lus10039990.g ID=Lus10039990.BGIv1.0 annot-version=v1.0 MESKHSSLKSWYNSSNQAVDTLFESYHASIDGQVIKIQKVYHYAQKPPFVYLNNAVSAWAIEILTEELSKYIPEGLHDMLSDVFNPHGDGNCGFRCILNI VNPIDDSQYVDIRRQLMEHVTLNWYDLYNNMYNTDLNDVIHRLGWPWETPCDDRWWFWNMDLLGHEITHGGQLNGSVYYLTPNFLLPFAVVTKLIPLSRD LAVAAPLSLLQILCYLNSLMIGRLLFQPDDGDDRPLSRSSILLPFSDDLSLASNKKSAKKPNLKISQANLFDEGSRPMLAIELIKSRDLQLITHINQSPR SSFDKQRALSGGVEGRADESHMRIRGNRESFRRSFRTGGLSSGTATSDQTLPGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039990 [exp]	0	1
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	4.0	1.0000
AT1G07175			unknown protein		Lus10040655 [exp]	5.5	0.9035
					Lus10011962 [exp]	5.7	1.0000
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	6.9	1.0000
AT1G29460			SAUR-like auxin-responsive pro...		Lus10020430 [exp]	7.9	0.9872
					Lus10022805 [exp]	8.0	1.0000
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	8.9	1.0000
					Lus10003636 [exp]	9.3	0.9134
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018098 [exp]	9.6	0.8846
					Lus10006919 [exp]	9.6	0.9755

Compare expression of checked genes

Lus10039990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.