Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12400 50 / 4e-08 unknown protein AT2G25270 49 / 2e-07 unknown protein AT1G71110 42 / 3e-05 unknown protein AT1G80540 40 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038102 [exp] 69 / 2e-14 AT2G25270 468 / 5e-161 unknown protein Lus10008813 [exp] 67 / 7e-14 AT2G12400 616 / 0.0 unknown protein Lus10008028 [exp] 66 / 3e-13 AT2G12400 641 / 0.0 unknown protein Lus10001929 [exp] 65 / 6e-13 AT2G25270 457 / 3e-156 unknown protein Lus10001945 [exp] 56 / 7e-10 AT2G25270 650 / 0.0 unknown protein Lus10034641 [exp] 46 / 2e-06 AT1G71110 587 / 0.0 unknown protein Lus10035272 [exp] 45 / 3e-06 AT1G71110 503 / 2e-174 unknown protein Lus10013492 [exp] 44 / 2e-05 AT1G71110 645 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060600 [exp] 64 / 9e-13 AT2G12400 579 / 0.0 unknown protein Potri.018G120200 [exp] 64 / 1e-12 AT2G12400 596 / 0.0 unknown protein Potri.006G258700 [exp] 57 / 2e-10 AT2G25270 590 / 0.0 unknown protein Potri.018G023200 [exp] 56 / 7e-10 AT2G25270 595 / 0.0 unknown protein Potri.010G115500 [exp] 44 / 6e-06 AT1G71110 646 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039991 pacid=23173552 polypeptide=Lus10039991 locus=Lus10039991.g ID=Lus10039991.BGIv1.0 annot-version=v1.0 ATGCAGTCTGTAAGTGCAACAGCAGCTCCCTTGTTTCTTGTAGCTGGAGTCTGGTTTGTGGTGTTTGGGCTATCGTTAGTCCTTAGCTGCCTTTGCTTCT GCTGCTGCGGTGGAGACTCTTATGGCTATTCACGACTCTGCTACGCACTCTCCCTCTTCTTTCTTATCCTTTTCACCGTTGCAGCTATGAGAATTGCTCT TGTAGTCCTTGCTGCCGTTATGCTTGGTTTGGCATTCCTTGGTTTCTTGTTCTCCATTCTTGGGATGACATGTCTTGTATACTTCCTGGTGATTCCAGGA TGGATTCTTGTCGCCGGTACATTCATCTTGTGTGGTGTCTTTCTTCTTCTCCATAAAAGAGGAGAAGAAGGAAACGAGCTGTGCATCATCCAGAGGAGGA AATGA
AA sequence Show only first row Show all	>Lus10039991 pacid=23173552 polypeptide=Lus10039991 locus=Lus10039991.g ID=Lus10039991.BGIv1.0 annot-version=v1.0 MQSVSATAAPLFLVAGVWFVVFGLSLVLSCLCFCCCGGDSYGYSRLCYALSLFFLILFTVAAMRIALVVLAAVMLGLAFLGFLFSILGMTCLVYFLVIPG WILVAGTFILCGVFLLLHKRGEEGNELCIIQRRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G12400			unknown protein		Lus10039991 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	4.0	0.9536
					Lus10036765 [exp]	5.7	0.9536
AT2G16190			unknown protein		Lus10011284 [exp]	6.9	0.9536
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	8.0	0.9536
AT1G24620			EF hand calcium-binding protei...		Lus10029660 [exp]	8.4	0.8107
					Lus10006395 [exp]	8.9	0.9536
					Lus10038080 [exp]	10.6	0.9331
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10014406 [exp]	11.2	0.9384
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10023568 [exp]	12.7	0.9307
					Lus10027005 [exp]	15.0	0.9174

Compare expression of checked genes

Lus10039991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.