Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47810 236 / 5e-77 PFK2 phosphofructokinase 2 (.1) AT4G29220 191 / 2e-59 PFK1 phosphofructokinase 1 (.1) AT5G56630 190 / 7e-59 PFK7 phosphofructokinase 7 (.1) AT5G61580 190 / 2e-58 PFK4 phosphofructokinase 4 (.1.2) AT4G32840 188 / 3e-58 PFK6 phosphofructokinase 6 (.1) AT4G26270 188 / 4e-58 PFK3 phosphofructokinase 3 (.1) AT2G22480 137 / 1e-38 PFK5 phosphofructokinase 5 (.1) AT1G12000 52 / 4e-08 Phosphofructokinase family protein (.1) AT4G04040 49 / 2e-07 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G76550 44 / 2e-05 Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008812 [exp] 279 / 2e-93 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10005488 [exp] 197 / 5e-61 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 194 / 1e-60 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 188 / 2e-57 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 186 / 6e-57 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 188 / 1e-56 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10002648 [exp] 143 / 2e-40 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10012738 [exp] 139 / 3e-39 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10038700 [exp] 49 / 6e-07 AT1G12000 875 / 0.0 Phosphofructokinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G002700 [exp] 250 / 3e-82 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G152600 [exp] 195 / 5e-60 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 193 / 6e-60 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.018G069200 [exp] 191 / 3e-59 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.007G010300 [exp] 122 / 4e-33 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.006G235066 [exp] 117 / 4e-33 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.006G235132 [exp] 62 / 7e-12 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.011G015900 [exp] 51 / 5e-08 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.006G281900 [exp] 51 / 5e-08 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.004G003800 [exp] 50 / 2e-07 AT1G12000 946 / 0.0 Phosphofructokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10039993 pacid=23173424 polypeptide=Lus10039993 locus=Lus10039993.g ID=Lus10039993.BGIv1.0 annot-version=v1.0 ATGTGTGGAGCAGTGAAGATATTCGAGAAAATCCAGCGACGGAAACTGAACACTGGCGTTGCAGGAATCCCAAAAACAGTTGACAACGACGTAGGGATCA TACACCGATCTTTCGGGTTCCAAACAGCTGAGGAAATGGCAGAACAAGCCATCGGCGCTGCTCAAGTGGAAGCAGAGAGAGGAGTTAATGGAATAGGCCT AGTGAAGCTAATGGGACGAAGCACGGGCCACATTGCCCTCTACGCCACACTAAGCAGCCGCGATGTTGACTATTGTCTAATCCCAGAAACTCCCTTATTC TTGGAAGGAAAACAAGGCCTGCTCGAGTTCATCAGGAGCAGGATCAAACAGAATGGCCACGTTGTAATTGTGGTAGCGGAGGGAGCCGGTCAGGAGCTGA TACCTAGGATTAAGGCTCAAAAGGAAGAGCGGGATGAGTCAGGGAATCCGGTTTTCTTTCATGTGGGTACGTGGTTGAAGTCTATGAGAAATGGATGA
AA sequence Show only first row Show all	>Lus10039993 pacid=23173424 polypeptide=Lus10039993 locus=Lus10039993.g ID=Lus10039993.BGIv1.0 annot-version=v1.0 MCGAVKIFEKIQRRKLNTGVAGIPKTVDNDVGIIHRSFGFQTAEEMAEQAIGAAQVEAERGVNGIGLVKLMGRSTGHIALYATLSSRDVDYCLIPETPLF LEGKQGLLEFIRSRIKQNGHVVIVVAEGAGQELIPRIKAQKEERDESGNPVFFHVGTWLKSMRNG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10039993 [exp]	0	1
AT2G35210		RPA, AGD10, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10000902 [exp]	1.0	0.8819
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	3.2	0.8281
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10027030 [exp]	4.0	0.8287
AT1G11755		LEW1	LEAF WILTING 1, Undecaprenyl p...		Lus10026330 [exp]	5.7	0.8112
AT5G61280			Remorin family protein (.1)		Lus10034714 [exp]	6.7	0.8320
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10037114 [exp]	8.9	0.8193
AT1G54680			unknown protein		Lus10033821 [exp]	9.7	0.8436
AT1G32120			unknown protein		Lus10017876 [exp]	13.1	0.7619
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	16.7	0.8129
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10008065 [exp]	19.0	0.7876

Compare expression of checked genes

Lus10039993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.