Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001472 [exp] 78 / 2e-19 ND / Lus10002600 [exp] 52 / 7e-09 AT3G14770 62 / 1e-10 Nodulin MtN3 family protein (.1) Lus10032779 [exp] 38 / 0.0003 ND / Lus10004094 [exp] 36 / 0.0006 ND / Lus10012943 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039994 pacid=23173406 polypeptide=Lus10039994 locus=Lus10039994.g ID=Lus10039994.BGIv1.0 annot-version=v1.0 ATGGTGAAGTGGATGATTCGTCCTCCTAGTAAGGATCCAATTGATTTTCATGGAGCTTCCACCATGAGGTACACCATTGAAATGCATTACAATGGTGTCC TAGACCCCCACCGGTATGTGTACGGTTCAGTAGTGCATTTTGACAGAGTCGATGACCGAAATCAACAAAATGATCGAGCTACTAATGATCGATTGGAAGT ACTTCCAAATATTGTACTCTGCACTAGGGAAGGAATACATGACGGCTTGAGACCGTTAGAAGGAGAAGCTGATATTGTTGCTTTCAATCTTACCGCTGCT GAGGCTTTGTCTGAGGAAGTTAACTGA
AA sequence Show only first row Show all	>Lus10039994 pacid=23173406 polypeptide=Lus10039994 locus=Lus10039994.g ID=Lus10039994.BGIv1.0 annot-version=v1.0 MVKWMIRPPSKDPIDFHGASTMRYTIEMHYNGVLDPHRYVYGSVVHFDRVDDRNQQNDRATNDRLEVLPNIVLCTREGIHDGLRPLEGEADIVAFNLTAA EALSEEVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039994 [exp]	0	1
					Lus10034884 [exp]	1.7	0.8409
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040731 [exp]	2.8	0.8024
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10021940 [exp]	7.7	0.8012
					Lus10032581 [exp]	7.7	0.7908
					Lus10003883 [exp]	10.6	0.7844
					Lus10034297 [exp]	11.8	0.7908
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010645 [exp]	12.6	0.7951
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	21.5	0.7488
AT5G36930			Disease resistance protein (TI...		Lus10011240 [exp]	23.7	0.7183
					Lus10011351 [exp]	25.7	0.7425

Compare expression of checked genes

Lus10039994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.