Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32060 476 / 5e-165 calcium-binding EF hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008807 [exp] 848 / 0 AT4G32060 478 / 8e-166 calcium-binding EF hand family protein (.1.2) Lus10005346 [exp] 466 / 6e-161 AT4G32060 536 / 0.0 calcium-binding EF hand family protein (.1.2) Lus10041027 [exp] 157 / 6e-45 AT4G32060 167 / 4e-49 calcium-binding EF hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023400 [exp] 508 / 1e-177 AT4G32060 607 / 0.0 calcium-binding EF hand family protein (.1.2) Potri.018G118116 [exp] 351 / 2e-119 AT4G32060 278 / 2e-91 calcium-binding EF hand family protein (.1.2) Potri.018G118008 [exp] 236 / 7e-75 AT4G32060 217 / 3e-68 calcium-binding EF hand family protein (.1.2) Potri.018G118089 [exp] 158 / 2e-45 AT4G32060 140 / 2e-39 calcium-binding EF hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10040000 pacid=23173546 polypeptide=Lus10040000 locus=Lus10040000.g ID=Lus10040000.BGIv1.0 annot-version=v1.0 ATGTTTCCTCGTGCAAACCTGAGGAAATCTTCACAATTTATACCCATAGTGTTTTCCGGACCCCGATTTTTCACCCCTCATCGCATTTTTCATCACTCCT CCTCAGAGGCTTTTGGCTCTGTCTCCGTTTCATCATCTCCATCGTCCTCCTCCTCTTCTCAATCTTTCCATAATGGTGGAAATAATGATCATGGGTCATT GAGATTCTTGCTTAGTTCGGTGTCTTCAGGCGTTGCAGTTGTTGGTTCCAGTTTAGGGTTGGGGTATTGGTATTCATCTCAATTAGATCGGAGTGGGTTT GTGTCTTATGCAGAAGGAACTTCCGCCATCACTGCCGATGAATCGGCATGGACGACCACCACCACAACGAATCTTAGCATGTCGCCATCGCGGACTAAAA CCGAACGTCTCTTCATATTTGGAGATGGGTTCAGGCGAAGGGTGTTCTTCAACTATGAAAAGCGAATAAGACTACAGAGTCCGCCTGAAAAGGTATTCGA GTATTTTGCATCCTTTAGAGGTCCCGACGGGGATGTTTTGATGACACCTACCGACTTGATGCGGGCCATTATTCCCGTGTTCCCTTCGTCGGAATCAGAT CGAGTCCGACAAGGGTTTCTTAGAGGGGAGAGGTTCCATGGAGAACTCCATTGTTCCCCTTCCAAGTTTTTTATGCTCTTCGACACAAATAGTGACGGGC TCATCTCATTTCCAGAGTACATTTTTTTTGTTACTCTGCTTAGTATTCCAGAATCAAGCTTCCATGTCGCCTTCAAAATGTTCGACCACAACAATAATGG AGAGATTGACATTGAGGAGTTCAAAAGGGTTATGGGACTTATGAGATCGCAGAGCAGGCAAGGTGCCCGCCATAGAAATGGAAAGAGACAAGGTCTAAAG GTCACAGACCTCGTTGAAAATGGCGGCTTATTAGAGTATTTTTTCGGTAAAGATGGCACTTCCTATCTTCAACATGACAAATTCGTTCAATTTCTTGGTG AATTGCACAGTGAAATACTGAAACTAGAGTTTGCTCACTACGACCACAACTCAACAGGGACAATATCAGCGAAAGATTTTGCATTGTCGCTGGTCGCATC GGCCGATGTTATCCACATAAGCAAGTTGCTCGATCGGGTTGAGGAACTAACCAACGATCCCACCCTTAGAGATGTACGGATCACATTCGATGAATTTCGA GAATTTGCAGATTTACGCAAACAATTGGAGCAATTGACTCTAGCCATCTTCAGTTATGGACGGGTGAATGGAATCTTAACCAAGAGAGACTTCCAACGAG CCTCATCTCAGGTATGTGGGATCTCCATCACTGATAATCTAGTGGACATAATCTTCCATGTTTTCGATACTGATCGAAGTGGAACACTTAGTTCAGACGA GTTCATAAGCGTGCTACAGAACAGACAAAACCATAGCTTGATAACTAGACAGGCTGGATTCAAAGGCTTGATCTCGTGCTGCATGAACTGTGCCACTACT TGCTCTATTGCAAAGGCTATGCTGTAA
AA sequence Show only first row Show all	>Lus10040000 pacid=23173546 polypeptide=Lus10040000 locus=Lus10040000.g ID=Lus10040000.BGIv1.0 annot-version=v1.0 MFPRANLRKSSQFIPIVFSGPRFFTPHRIFHHSSSEAFGSVSVSSSPSSSSSSQSFHNGGNNDHGSLRFLLSSVSSGVAVVGSSLGLGYWYSSQLDRSGF VSYAEGTSAITADESAWTTTTTTNLSMSPSRTKTERLFIFGDGFRRRVFFNYEKRIRLQSPPEKVFEYFASFRGPDGDVLMTPTDLMRAIIPVFPSSESD RVRQGFLRGERFHGELHCSPSKFFMLFDTNSDGLISFPEYIFFVTLLSIPESSFHVAFKMFDHNNNGEIDIEEFKRVMGLMRSQSRQGARHRNGKRQGLK VTDLVENGGLLEYFFGKDGTSYLQHDKFVQFLGELHSEILKLEFAHYDHNSTGTISAKDFALSLVASADVIHISKLLDRVEELTNDPTLRDVRITFDEFR EFADLRKQLEQLTLAIFSYGRVNGILTKRDFQRASSQVCGISITDNLVDIIFHVFDTDRSGTLSSDEFISVLQNRQNHSLITRQAGFKGLISCCMNCATT CSIAKAML

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32060			calcium-binding EF hand family...		Lus10040000 [exp]	0	1
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10012032 [exp]	4.2	0.8430
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10013764 [exp]	5.2	0.6085
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	6.5	0.8202
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	8.1	0.8201
					Lus10022511 [exp]	9.4	0.8201
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	10.5	0.8201
					Lus10010827 [exp]	11.5	0.8201
					Lus10005843 [exp]	12.4	0.8201
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	13.3	0.8201
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015093 [exp]	13.4	0.8057

Compare expression of checked genes

Lus10040000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.