Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25270 279 / 1e-83 Ubiquitin-like superfamily protein (.1) AT5G42220 189 / 3e-50 Ubiquitin-like superfamily protein (.1) AT5G11080 84 / 5e-17 Ubiquitin-like superfamily protein (.1.2) AT2G17200 63 / 4e-10 DSK2 ubiquitin family protein (.1) AT2G17190 59 / 7e-09 ubiquitin family protein (.1) AT2G36170 54 / 2e-08 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G52590 54 / 2e-08 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT1G23410 53 / 6e-08 Ribosomal protein S27a / Ubiquitin family protein (.1) AT3G62250 53 / 7e-08 UBQ5 ubiquitin 5 (.1) AT2G47110 53 / 8e-08 UBQ6 ubiquitin 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008806 [exp] 904 / 0 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1) Lus10034563 [exp] 179 / 4e-49 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1) Lus10021830 [exp] 155 / 9e-39 AT5G42220 595 / 0.0 Ubiquitin-like superfamily protein (.1) Lus10014433 [exp] 60 / 5e-09 AT2G17200 567 / 0.0 ubiquitin family protein (.1) Lus10023934 [exp] 59 / 7e-09 AT2G17200 565 / 0.0 ubiquitin family protein (.1) Lus10008873 [exp] 54 / 2e-08 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 53 / 7e-08 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 53 / 7e-08 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10018367 [exp] 50 / 2e-06 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G059700 [exp] 649 / 0 AT5G25270 343 / 3e-108 Ubiquitin-like superfamily protein (.1) Potri.018G115500 [exp] 638 / 0 AT5G25270 352 / 2e-111 Ubiquitin-like superfamily protein (.1) Potri.002G013500 [exp] 212 / 1e-57 AT5G42220 602 / 0.0 Ubiquitin-like superfamily protein (.1) Potri.005G247900 [exp] 207 / 3e-56 AT5G42220 471 / 6e-152 Ubiquitin-like superfamily protein (.1) Potri.005G100200 [exp] 66 / 7e-11 AT2G17200 478 / 2e-164 ubiquitin family protein (.1) Potri.009G166000 [exp] 62 / 1e-09 AT2G17200 547 / 0.0 ubiquitin family protein (.1) Potri.004G194000 [exp] 56 / 5e-09 AT3G52590 210 / 3e-71 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.015G007100 [exp] 54 / 2e-08 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 54 / 2e-08 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077200 [exp] 54 / 2e-08 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10040001 pacid=23173442 polypeptide=Lus10040001 locus=Lus10040001.g ID=Lus10040001.BGIv1.0 annot-version=v1.0 ATGGGAAGTACTGCTGCTGAAAAGATTCCTAGGGCAGACGAGTCTGAAGGGCCTCAAGCAGCCATTGAGATAAAGATAAAGACATTGGACTCTCAAACTT ACACTTTGAAGGTCGACAAGCAGACGCCAGTTCCTGCTCTGAAAGAACAAATTGCTTCTGTTACTGGTGTTTTAACCGAACAACAACGTCTAATATGTCG TGGAAGAGTTCTGAAGGATGATCAGCTACTCTCTGCATATCATGTGGAAGATGGTCACACCTTGCATCTGGTGGTTAGACAACCAGTCCCACCATTTGCT GAGGGCTTTTCCAATACCCAAGTAATCTACTATGACTTAACTGCAACATTCAACAATCCCACAGCTGATCCTACTTCAATTCCAAGTCGGAGTCACTCAG GTCCCAGCATTGTCATAGAAGCTTTCAGTATGCCTGATCAAAGAGATGGGGTTCCTCCTGAAATCAGTAGGATCGTCTCTGCTGTCCTTGGCTCCTTTGG ACTTTCTAGTCTCGGAAGTGGTGCTGAAGGTGGTGATGCAACATGGGACCATGCATTGGAAAGAATGTCATCTAGTGGTGGCACATTGGAGGTGAACCAA CAAGGTGGTACTAGGGGCCAGTCTGACAGAGCACAAACTGGTTTTGGACTTCCAGGAGCTGCTTCTTCGTTGGGATCTCTGCATCCTCCTGTTATTCCTG ATGCACTGACGACTTTGACCCAATACCTTAGTCATATACGGCGTGAATTCAATCAAATTGGTAGAAGTGGTGAGAATAATTCCCAAACTGATGACACAAG CAGATCAGAGCAAAGGGATGGTAATTCCTCATCAGGAACTGGAAATGTAGAGGGCAGACTGCCGACACCAGCAGCCTTGGCAGAAGTGATGTTGTCTAGT AGACAATTGCTCATTGAACAAGTTTCAGAAAGCTTACTGCAACTCGGAAGGCAATTAAACATTCAAGAAAGTATTACTGATTCGTCAGCCCGGTTGACAG CTCAGGGTACAGCATGGAGAACAGGAGTTCAACTTCATAATTTGGGTGCATTTCTACTTGAATTGGGACGGACAACCATGACTTTACGACTAGGTCAAGC CCCGTCAGAGGCTGTAGTGAATACTGGTCCTGCAGTTTTCATAAACTCCACCAGTCCAAATCCTCTCATGGTTCAGCCTCTTCCTTTCCAGCCGGGAGCA AGCCTTGGTGCAAGTTCAATGGGTTCTGTGCAGCCTGGATCTGGATTTGTTCCTCGTCGCATTGATATTCAGATACGTAGAGCAGGTTCGTCTAGCATCT CATCAGCAGGTAACAATGAAGAACGAAGTGAGACTCCTCAACAGCAGCAGCCTGGGCAGAGAAATTCTGGATCAGGTGGCGCTAGTACCGAGAACACAGG TAATCAGACAGCATCCAGAGTCATGGAAGGATCTATGACTGGGGAAGGTGGAGTACGGGTGGTGCCAATTAGAACAGTGGTTGCAGCAGCAGTCCCTGCT TCATTTGGTCGCGTACCTTCTAATTCATCTGCTAATTCTCTAGGAATGTTCTATCATCCGCTTCTCGGAAGATTTCAGCAGGCAGGTTCTGGAACTGCGA CCACTGCTGAACAAAGATCTCGAACACATGGAAACCATCAATCTGCGAGTACACAAACTGAGCAACAGCCATCTCGTAATGATGAAAATCAGGGAACTGA TGCAACATCACCTAATCCGGAGCTCCGGCCAACTACTCGTAGCATAAGCATCAACATTCTATCGGCAGCAGGTGGGACACGAACCAACCAGGAATCTGAT GGACAAGTTCCGAGCAGCGTTATGCAATTCCTGAGGTCCTTGTTTCCCGTTGGGGAAATACATGTGGAGGGTGACAGCGGTCCAGGAACCGCAACTCCTG CTGCTGCTGCTGCTGCTACTGCTACTGAGAATGCAGGACCGTCAGCTGGTTCAGAAGAAGGATCAGAATCGATACCAACAAATGAAGGAATCTTCCTGTC GAATTTACTCCGCCAGATATTGCCAGTTGTATCCGAACAAGGTGGATCAGAGGCAGGGGATGGGCGCCAAGGAGAAGTAGCCTCCTCGGAAAACCAGGCT GAAAACAATGAAGTAGGGACATCTCGTCGTCGGGATGATTCGTGTCCAAGCAGTCCGAGCTCAAAACGTCAAAAGGAAGAGAATATTGATCAAGATGATC ATGGGGCTGCTGATCCTAATGGTGATGCTAGTGTTCAATTTGACGATTGGACCTCTATGAAAGAGCGGCGATCTTGA
AA sequence Show only first row Show all	>Lus10040001 pacid=23173442 polypeptide=Lus10040001 locus=Lus10040001.g ID=Lus10040001.BGIv1.0 annot-version=v1.0 MGSTAAEKIPRADESEGPQAAIEIKIKTLDSQTYTLKVDKQTPVPALKEQIASVTGVLTEQQRLICRGRVLKDDQLLSAYHVEDGHTLHLVVRQPVPPFA EGFSNTQVIYYDLTATFNNPTADPTSIPSRSHSGPSIVIEAFSMPDQRDGVPPEISRIVSAVLGSFGLSSLGSGAEGGDATWDHALERMSSSGGTLEVNQ QGGTRGQSDRAQTGFGLPGAASSLGSLHPPVIPDALTTLTQYLSHIRREFNQIGRSGENNSQTDDTSRSEQRDGNSSSGTGNVEGRLPTPAALAEVMLSS RQLLIEQVSESLLQLGRQLNIQESITDSSARLTAQGTAWRTGVQLHNLGAFLLELGRTTMTLRLGQAPSEAVVNTGPAVFINSTSPNPLMVQPLPFQPGA SLGASSMGSVQPGSGFVPRRIDIQIRRAGSSSISSAGNNEERSETPQQQQPGQRNSGSGGASTENTGNQTASRVMEGSMTGEGGVRVVPIRTVVAAAVPA SFGRVPSNSSANSLGMFYHPLLGRFQQAGSGTATTAEQRSRTHGNHQSASTQTEQQPSRNDENQGTDATSPNPELRPTTRSISINILSAAGGTRTNQESD GQVPSSVMQFLRSLFPVGEIHVEGDSGPGTATPAAAAAATATENAGPSAGSEEGSESIPTNEGIFLSNLLRQILPVVSEQGGSEAGDGRQGEVASSENQA ENNEVGTSRRRDDSCPSSPSSKRQKEENIDQDDHGAADPNGDASVQFDDWTSMKERRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25270			Ubiquitin-like superfamily pro...		Lus10040001 [exp]	0	1
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	2.0	0.9255
AT1G23230			unknown protein		Lus10035997 [exp]	2.8	0.9152
AT5G04250			Cysteine proteinases superfami...		Lus10038708 [exp]	4.2	0.9042
AT4G28400			Protein phosphatase 2C family ...		Lus10008556 [exp]	7.1	0.9256
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	7.7	0.9225
AT3G15920			Phox (PX) domain-containing pr...		Lus10023125 [exp]	9.0	0.8909
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10023316 [exp]	9.5	0.9120
AT5G05570			transducin family protein / WD...		Lus10009082 [exp]	11.4	0.8724
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	12.6	0.9032
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	13.5	0.8989

Compare expression of checked genes

Lus10040001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.