Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13100 676 / 0 AtG3Pp5 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) AT3G47420 503 / 3e-175 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) AT1G30560 476 / 7e-165 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1) AT4G25220 468 / 1e-161 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1) AT4G17550 467 / 7e-161 AtG3Pp4 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040154 [exp] 488 / 3e-169 AT4G17550 734 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10004358 [exp] 484 / 6e-167 AT4G17550 725 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10027210 [exp] 480 / 5e-166 AT3G47420 705 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10031153 [exp] 474 / 4e-164 AT3G47420 695 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10038923 [exp] 412 / 4e-141 AT3G47420 586 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10027211 [exp] 301 / 5e-99 AT3G47420 454 / 9e-159 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10031729 [exp] 110 / 5e-29 AT3G47420 155 / 2e-46 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G115000 [exp] 735 / 0 AT2G13100 699 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Potri.001G124200 [exp] 482 / 7e-167 AT3G47420 711 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.003G109300 [exp] 474 / 6e-164 AT3G47420 694 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.001G152300 [exp] 472 / 1e-162 AT4G17550 692 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Potri.003G082366 [exp] 425 / 1e-144 AT4G17550 624 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10040002 pacid=23173525 polypeptide=Lus10040002 locus=Lus10040002.g ID=Lus10040002.BGIv1.0 annot-version=v1.0 ATGCAATCCAAAACCCAAAGCAGCGTAGCCCCAGGTTTTGCTCTCTTCCCATCTCTTAAACCTCCTAAAAAAACCCTGACTTTCCACCAGTTTGCAGTCT TGATCATAACTTTCTTTGCTTATGCTTCCTTCCACGCTTCACGAAAACCGCCCAGCATAGTGAAAAGCGTACTTGGACCAGCCCCATTGACTAATTCGAA TTCGAGCTCTTTTGATACTGGCTGGCCTCCGTTTAATGGAACTGACGGCACACGAAGGCTTGGGGAGCTTGATCTAGCTTTCCTATCTGCGTATGCTGTT GGAATGTATATTGCAGGACATGCTGGGGACAGGATGGATTTGAGGTTGTTCCTCGTTTTCGGAATGATTGGCAGTGGTGTCTTGACTATTGTGTTTGGAT TAGGGTATTGGTTTGACATACATTTGTTGGCATTCTTTATTGGCGTGCAGATCTTGTGTGGGATTTTTCAGTCTATTGGTTGGCCTTGTGTCGTTGCAGT AGTTGGGAATTGGTTTGGGAAATCCAAGAGAGGGTTGATATTGGGAATTTGGAATTCACATACATCAGTAGGGAACATTATAGGATCAGTGCTGGCTTCC ACAGTTTTGGAGTTTGGATGGGGATGGTCATTTGTGTTGCCTGGTGTTTTGATCATCTTTGTTGGGGTTTTCGTGTTTTGTTTTCTTGTTGTTAGTCCTG AGGATCTTGGGTATGAGCTTTCTGGGAAGGAAATTGAGATGGATGAGAAAGCGAATGGTGTTGAGATGGCCGAAAAGGTGGAATCAGAGGAGATCGGGCT TCTAGATACAGAAAATGATGATTCGGTCTCTTCTTCTGGTGCTATTGGCTTCTTGGAAGCTTGGAGATTGCCAGGGGTGGCACCATTTGCGTTCTGCCTT TTCTTCTCAAAGCTAGTTGCTTACACATTCTTATATTGGCTGCCTTTCTACATAAGGCACACAGCTGTGGCTGGAGTTCATTTATCAGATAAGACTGCTG GCATCCTATCAACAGTGTTCGATATCGGAGGAGTGGTTGGGGGAGTTGTGGCAGGATTCGTATCTGATCAGATAGAAGCTCGAGCAGTAACCTCCATCAT ATTCCTGATACTGTCAATTCCAGCACTAATTTTGTACAGGCTTTATGGAAGCGTATCTATGGTGACCAACATCACATTGATGTTTACTTCAGGCTTGCTG GTGAATGGCCCGTATGCTTTGATCACAACTGCAGTGGCAGCTGATCTTGGTACGCAGGACGCCATAGAAGGCAATTCCCGTGCTTTAGCTACTGTGTCTG CAATAATCGATGGAACTGGGTCTGTTGGGGCAGCTGTAGGTCCCCTTATGGCTGGCTACATCTCAACTAGAGGGTGGAATGGTGTATTCTTGATGCTCAT TGTTTCCATTTCCTTTGCCATTCTATTCTTGATTCGAGTGGCGAGAAATGAGATAAAGGGGAAGATGAATGGCACAAGTCTTGCTGCAGCCATGAACACC CCTGCAAACTGA
AA sequence Show only first row Show all	>Lus10040002 pacid=23173525 polypeptide=Lus10040002 locus=Lus10040002.g ID=Lus10040002.BGIv1.0 annot-version=v1.0 MQSKTQSSVAPGFALFPSLKPPKKTLTFHQFAVLIITFFAYASFHASRKPPSIVKSVLGPAPLTNSNSSSFDTGWPPFNGTDGTRRLGELDLAFLSAYAV GMYIAGHAGDRMDLRLFLVFGMIGSGVLTIVFGLGYWFDIHLLAFFIGVQILCGIFQSIGWPCVVAVVGNWFGKSKRGLILGIWNSHTSVGNIIGSVLAS TVLEFGWGWSFVLPGVLIIFVGVFVFCFLVVSPEDLGYELSGKEIEMDEKANGVEMAEKVESEEIGLLDTENDDSVSSSGAIGFLEAWRLPGVAPFAFCL FFSKLVAYTFLYWLPFYIRHTAVAGVHLSDKTAGILSTVFDIGGVVGGVVAGFVSDQIEARAVTSIIFLILSIPALILYRLYGSVSMVTNITLMFTSGLL VNGPYALITTAVAADLGTQDAIEGNSRALATVSAIIDGTGSVGAAVGPLMAGYISTRGWNGVFLMLIVSISFAILFLIRVARNEIKGKMNGTSLAAAMNT PAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	0	1
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10005703 [exp]	3.0	0.8579
AT4G09580			SNARE associated Golgi protein...		Lus10017913 [exp]	3.3	0.8231
AT3G51580			unknown protein		Lus10025140 [exp]	4.9	0.8425
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	5.5	0.8480
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	7.1	0.8450
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10038833 [exp]	7.5	0.8324
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	7.6	0.7970
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10036394 [exp]	8.0	0.8156
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	8.4	0.8174
AT3G22750			Protein kinase superfamily pro...		Lus10042622 [exp]	9.0	0.8259

Compare expression of checked genes

Lus10040002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.