Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35100 306 / 9e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT3G62030 67 / 6e-13 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT4G34960 67 / 8e-13 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G74070 66 / 2e-12 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 64 / 6e-12 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G29960 63 / 8e-12 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT3G55920 63 / 1e-11 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 62 / 7e-11 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT5G58710 60 / 1e-10 ROC7 rotamase CYP 7 (.1) AT4G34870 57 / 5e-10 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040007 [exp] 485 / 2e-175 AT5G35100 325 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10019578 [exp] 476 / 4e-172 AT5G35100 320 / 2e-110 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10011330 [exp] 68 / 5e-13 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10014846 [exp] 67 / 1e-12 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10003138 [exp] 67 / 2e-12 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10030408 [exp] 64 / 1e-11 AT3G55920 333 / 5e-116 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10018238 [exp] 62 / 2e-11 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 62 / 2e-11 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10020992 [exp] 64 / 3e-11 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G189900 [exp] 398 / 4e-141 AT5G35100 326 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.009G132800 [exp] 69 / 8e-14 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.003G167700 [exp] 69 / 1e-13 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.002G185200 [exp] 66 / 1e-12 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.001G060200 [exp] 66 / 2e-12 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.009G046500 [exp] 65 / 2e-12 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.010G189000 [exp] 64 / 6e-12 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G173500 [exp] 64 / 7e-12 AT4G34960 317 / 7e-111 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G058700 [exp] 64 / 1e-11 AT1G74070 311 / 2e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G251700 [exp] 62 / 2e-11 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10040008 pacid=23173556 polypeptide=Lus10040008 locus=Lus10040008.g ID=Lus10040008.BGIv1.0 annot-version=v1.0 ATGGCCTCGTTTCTCACACCTCCTTCACCTCACTTGCTCACTCGCCGCTCCCTCCTCCTCTCCACCTCCCTCGCCCCACTCACTCCCCCACCCATCCGCC TCCCTTCTCCTCCTGACACCACCATAACCGACCGCATCTTCATGGACTTCTCCATCTGCGAGTCGTTATTCAGACCCGACCGCACCGTATCCGACACTGT CTCAACACTCTGCACTGATCCAATCCCACTCGGCCGCCTCGTCCTCGGCCTATACGGCCACCTCGTCCCTTCCACTGTCTCCAATTTCAAGTCCATGGTC ACTTCCTCTGCCTACAAGAACACTCTCGTCCACAAGGTCCTCCCTGGTCAGTTCTTTGTTGCCGGTCGCCAAGGTAAGAAGGATTTGGGGGAGGTTAAGC CTCCTGGGGATTTGCCCAGGAATGTTGAGTCTGCAGATCCCAAGGCTTATGTGTTGAGACATGACAAGGCTGGGGTGCTTTCTTTGTGTTTGGAGGAGAA TGATGATGAGGATGAGGTCAAGCTTGATCCTGATTATAGGAATGTTGAGTTCTTGATAACTACCGGTCCTGCTCCTTGCCCTCAACTCGATGATAAGAAC ATTGTGTTTGGAGCTGTGCTACAAGGAATGGATGTTGTGACGGCAATAGCTTCTATCCCAACGTACAAACCCTCGGAAAGGATCCGGCAGTTCAATGATC TGGCAGAATTTTTCGGGGACGAAAGAGCACAGAATGCACGTACAATCTGGGATAAGCCGCTTAAAACTGTATATATCAGTGACTGTGGAGAGCTCCGAGT AGCAAAGCCTTCTCTTTCCCCTACATTACCCTAG
AA sequence Show only first row Show all	>Lus10040008 pacid=23173556 polypeptide=Lus10040008 locus=Lus10040008.g ID=Lus10040008.BGIv1.0 annot-version=v1.0 MASFLTPPSPHLLTRRSLLLSTSLAPLTPPPIRLPSPPDTTITDRIFMDFSICESLFRPDRTVSDTVSTLCTDPIPLGRLVLGLYGHLVPSTVSNFKSMV TSSAYKNTLVHKVLPGQFFVAGRQGKKDLGEVKPPGDLPRNVESADPKAYVLRHDKAGVLSLCLEENDDEDEVKLDPDYRNVEFLITTGPAPCPQLDDKN IVFGAVLQGMDVVTAIASIPTYKPSERIRQFNDLAEFFGDERAQNARTIWDKPLKTVYISDCGELRVAKPSLSPTLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040008 [exp]	0	1
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040007 [exp]	1.0	0.9902
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10019578 [exp]	1.4	0.9166
AT2G38780			unknown protein		Lus10019776 [exp]	3.0	0.9064
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10023013 [exp]	6.0	0.9033
AT5G64480			unknown protein		Lus10007107 [exp]	7.7	0.8933
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	8.1	0.8816
AT1G64355			unknown protein		Lus10032371 [exp]	9.9	0.8630
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	10.4	0.8696
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	13.4	0.8603
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	14.9	0.8560

Compare expression of checked genes

Lus10040008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.