Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35180 790 / 0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT4G19040 219 / 3e-61 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT3G54800 195 / 8e-53 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT1G06050 157 / 1e-42 Protein of unknown function (DUF1336) (.1) AT2G28320 151 / 5e-38 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT5G10750 141 / 4e-37 Protein of unknown function (DUF1336) (.1) AT5G45560 147 / 1e-36 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT5G25010 120 / 5e-30 Protein of unknown function (DUF1336) (.1) AT5G24990 120 / 6e-30 Protein of unknown function (DUF1336) (.1) AT5G25020 85 / 5e-18 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019585 [exp] 1198 / 0 AT5G35180 744 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040015 [exp] 809 / 0 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 715 / 0 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 449 / 5e-150 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10012149 [exp] 233 / 4e-66 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10007596 [exp] 228 / 4e-64 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10008154 [exp] 151 / 9e-41 AT1G06050 362 / 5e-126 Protein of unknown function (DUF1336) (.1) Lus10040406 [exp] 151 / 9e-38 AT2G28320 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10016094 [exp] 150 / 2e-37 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113100 [exp] 810 / 0 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.003G100600 [exp] 219 / 4e-61 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.007G130400 [exp] 149 / 7e-40 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.010G223400 [exp] 155 / 3e-39 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.008G038800 [exp] 155 / 4e-39 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.017G027700 [exp] 147 / 4e-39 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.001G132900 [exp] 149 / 4e-37 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.009G011200 [exp] 149 / 5e-37 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.018G014234 [exp] 140 / 1e-36 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.008G213000 [exp] 143 / 2e-35 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10040011 pacid=23173498 polypeptide=Lus10040011 locus=Lus10040011.g ID=Lus10040011.BGIv1.0 annot-version=v1.0 ATGTCAGTGGAAGGGTGGGAACTTGATGGGTATGATAGCAGTGGTAGTGGCGGCCGGAGAAGCAGATCCAGCTCTAGCAGCGGCGGCGGCGGTGGAGATG GTGAAGAGAAAGACAGAGCGGTTGATGAGTATTTTGGGTGGGTTTACCATTTGGGGGCTAGTTCAATTGGGTATGTATATTGCTACTTGAGGTTTCTGTT CCTAAGGGGAAAGATTGTGGAGATGTACAAGCGAGATCCTCATCAGCATCCTGGAATTCGACCCATCAGAAGAGGTATAGTTGGGCCAACATTTATGGTG GAAGACTTAGGTTGCAGAAGGGTTCACCGTGGGGACGTTTATGTTTTACGGTTCTACAACAGATTGGACGAGGAGAAAAAGGGGGAATTTGCGTGTGCTT CCGCTGAAGAAGCTCGGAAATGGGTGGAGGCATTTGATCGTGCAAAGCTACAGGTTGGGCACTTGATGTCACAAATGGGTAGTGCCAGAAACAGGCTGAC CATGGAAACTGAGATTAATTTAGGAGTACATCGGAATGGAGTAAGACGATATGCTACTGGATTGAAACGGCTTATTAGTGTGGGTAAAGGACCTGAAAAG CTATTGCAGCAAGTCGCAAGTCTTGACCCAAAGGTCAGGACAGATGTAGATTTTGAAGATGAAAGTGGCGATGCAGTTGAAACACATGAATGGAAATGTG TCCGCACCATAAATGGTGTTCGCATCCTAGAGGATGTCTCTGACTGCAAGGTCAAGAGTGTTAAAGGTGTTCTAGTGAAAGCCGTTGGTGTTATTGATGC AAGTGCTGATACCGTTTTTGAGGTATTTTGTAACCTTGATCGACATCAAAGATACGAATGGGATACGTTGACAGGTGATTTGGAGCTGTTGGATACTTAT GATGGAAACTATGATGTAGTATATGGCACATTTAATCCGAAAAACCTGTCTCGGTGGAGATCCAACAGAGATTTTGTCTACTCTAGGCAATGGTTTTATG AGGATGGAACCTACACAATCTTGCAGTTTCCTGCTGTACACAAGATGCGGCCCCTAAGATCTGGTTTTCGGAGGAAGAAAATCAACTCTTCAACTTGGGA GATCAGGAGGTTAAACACACCAATGGGTTCTACCACTTCAAAATGCATCGTCACAGAAATGTTAGAGATACATCAAGCAGGATGGAATAGATGGAAGCAA AACCTAAGCTCAAAGTTTGAAAGGACTATACCATATGCTTTGCTGTCTCAAGTTGCCGGTCTAAAAGAATATATTGGAGCCAATCCGGCGCTCTGTCCAG TTATGCGGTCAAGTATATCTTATATTTCCGACACTTCTAGTGATCAGGATATTGAGGAAGTGGAGGATGAATTTTTTGATGCAAACAATGGTGAATCTTC ATCATCAGGAGAAGAGAGTGATAATGACAGCAAACCAGTGAATAAGGTAGCTAGAGTGAAACTGAAGAATGTTTTCTGGGCAGTCAGATTCACTAACATG GCTAAGAAGAAAACTTCAGGTTCGATAAAAGGTAGGGAATTGGATCATAGCTTACCCCCAGTGTGCATTGATCCAAGCCAGTTTTATGGTACTATGCGCC AAGGAAATGATAAAGGTTGCTGGGAGTCTCCTAGTAAAACGGGTTTTCTGGTGATGGGAGGAGATCCTCTATTCAAGCTCATTGCAGCTGATTGGTTCAG AAGTGAGCAACCAGTAGAATGTTTTGGACTGCACCCCAAGTGTCTATTACAGAGTGAAGAAGGGAAAAAGCTTCCGTTTGTCTTTGTCTTTAACCTCCAG ATTCCAGCAAAACCATGCCACAGCTTGATTCTTTACTTCGCAGCAGATAGGCCGTTAAAAGCAGGTTCTCTGATGGATAAATATGCAAACGGGACTGATG CATTTCGGAAATCCAGATTCAAATTAATCCCCAGTATTGAGGGTTATTGGCTTGTCAAAAGAGCTGTTGGAAACAAAGCTTGCATACTATCCAAGAATGT AAATTGCAAATACCTGAGACAAGACAACTTCTTGGAGATGGATGCAGATATTGGGTCATCTGCCATTGCGAAGAAAGTGATTGGTATTAGCTTTGGTTGT ACAAGCTTCATCGCTGATCTTGCAATCGTGATAGAGGGACAAGATGAGACAGAGTTACCGGAGTGTCTTCTTGGCACGGTTCGCTTACACCATCTCGGGC CCGAGTATTCAGTGCCTCCAGGGACTTGA
AA sequence Show only first row Show all	>Lus10040011 pacid=23173498 polypeptide=Lus10040011 locus=Lus10040011.g ID=Lus10040011.BGIv1.0 annot-version=v1.0 MSVEGWELDGYDSSGSGGRRSRSSSSSGGGGGDGEEKDRAVDEYFGWVYHLGASSIGYVYCYLRFLFLRGKIVEMYKRDPHQHPGIRPIRRGIVGPTFMV EDLGCRRVHRGDVYVLRFYNRLDEEKKGEFACASAEEARKWVEAFDRAKLQVGHLMSQMGSARNRLTMETEINLGVHRNGVRRYATGLKRLISVGKGPEK LLQQVASLDPKVRTDVDFEDESGDAVETHEWKCVRTINGVRILEDVSDCKVKSVKGVLVKAVGVIDASADTVFEVFCNLDRHQRYEWDTLTGDLELLDTY DGNYDVVYGTFNPKNLSRWRSNRDFVYSRQWFYEDGTYTILQFPAVHKMRPLRSGFRRKKINSSTWEIRRLNTPMGSTTSKCIVTEMLEIHQAGWNRWKQ NLSSKFERTIPYALLSQVAGLKEYIGANPALCPVMRSSISYISDTSSDQDIEEVEDEFFDANNGESSSSGEESDNDSKPVNKVARVKLKNVFWAVRFTNM AKKKTSGSIKGRELDHSLPPVCIDPSQFYGTMRQGNDKGCWESPSKTGFLVMGGDPLFKLIAADWFRSEQPVECFGLHPKCLLQSEEGKKLPFVFVFNLQ IPAKPCHSLILYFAADRPLKAGSLMDKYANGTDAFRKSRFKLIPSIEGYWLVKRAVGNKACILSKNVNCKYLRQDNFLEMDADIGSSAIAKKVIGISFGC TSFIADLAIVIEGQDETELPECLLGTVRLHHLGPEYSVPPGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	0	1
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10037296 [exp]	2.4	0.8317
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10001695 [exp]	3.5	0.8420
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	6.9	0.8450
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10041177 [exp]	8.8	0.7962
AT4G14615			unknown protein		Lus10021896 [exp]	10.4	0.7679
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013100 [exp]	11.0	0.7596
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10012611 [exp]	12.0	0.8095
AT2G38900			Serine protease inhibitor, pot...		Lus10003225 [exp]	12.2	0.8212
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	13.9	0.7877
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	15.2	0.8124

Compare expression of checked genes

Lus10040011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.