Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20320 298 / 8e-91 DCL4, ATDCL4 dicer-like 4 (.1.2) AT3G43920 119 / 3e-29 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT1G01040 116 / 4e-28 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT3G03300 108 / 1e-25 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT3G20420 48 / 5e-06 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019587 [exp] 360 / 5e-121 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10016367 [exp] 143 / 3e-37 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019757 [exp] 140 / 4e-36 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10019588 [exp] 133 / 1e-33 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2) Lus10030177 [exp] 114 / 2e-27 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10036447 [exp] 102 / 4e-23 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10005142 [exp] 72 / 3e-13 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10005141 [exp] 45 / 5e-05 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188800 [exp] 332 / 1e-102 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.018G047500 [exp] 131 / 3e-33 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.002G181400 [exp] 110 / 4e-26 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.010G181400 [exp] 109 / 1e-25 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.008G075900 [exp] 105 / 3e-24 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.002G226700 [exp] 45 / 4e-05 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.011G086700 [exp] 42 / 0.0006 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain
Representative CDS sequence Show only first row Show all	>Lus10040013 pacid=23173494 polypeptide=Lus10040013 locus=Lus10040013.g ID=Lus10040013.BGIv1.0 annot-version=v1.0 ATGGATGTAGAAGCTACACCTGGGAATAAGGCCCAAAAGCCACCACATAAGCAAAGCCCTGGCCAAGTGATGGGGCCCTCATACATGGGGAGAAAGGAAC GAGCTAACTGTATTTGCGGGGACCCGCGACCCATACAGCTCCAAGTGGAGTCTGTACCTCCGGTAGACACGTTTGTACGCTCGTTTTTCGGCCTTCTTGT TCTGGAAGCACTCACCACAGAAAACTGTCAAGAGCGCCTTTCTCTTGAAAGACTCGAAATTCTGGGAGATGCTTTTCTTAAATTTGCTGTTGGTCATTGC CTGTTTCTTCTTAGCGATGCCCTTGGCGAGGGGGAGCTGACAAACAAAAGATCTAATGCCGTTAATAACTCCAATTTGTTCAAGTTAGCTATTAGAAGCA ACTTACAGGCATATATACGTGATCAGCCATTTGATCCATGTCAATTTTTTGCTTTGGGGCGTCCGTGCTCTGTTATTTGTACCAAGGAATCAGAAGGATC GATTCATGATCTAACTGGTAGGTCCTCACGAGATCATCCTAACAGTGAAGTTAGATGCAATAAAGGTCATTATTGGCTACAAAAGAAGACAATTGCTGAT TTGGTTGAAGCTCTTGTTGGAGGATTTATAGTAGACAGCGGGTTCAAAGGTGCAACTGCTTTCCTTAAATGGATTGGCATCAAAGTAGGATTTGACCCAT CCCAAGTTTCTAAGATTTGTGCAGCAAGCTGTCGCTACATGCCACTTTCTGCTTCAGTGGGCATTACTGCTCTCGAGAATTCACTAGGATATTCGTTTCA TCATAAAGTTTATCCGAGGTTGAAGCCTGATCACCTGACAGATCTTAGATCAGCATTGGTTAATAATAGGGCTTTCGCCAATGTTGCAGTTGTTAGATCT TTCCACAAGTTTCTTATAAGTGAATCTAGCGCCCTCTCTGAGGCCATTCAAGCTTATGTGGACTTTGTTGAAGCAGCTCCGAGAGAAGGTGGTCTCTCTG AAGGGCCAAGATGTCCAAAGGTTATCTTGGAGATATTAGCTTGCTCCTTTCTCACATTCTTCCTTTACAATGTTCGGTTACCAATCTCATCAATTTTATT GGTGGGAAATGTTGATTGTTAG
AA sequence Show only first row Show all	>Lus10040013 pacid=23173494 polypeptide=Lus10040013 locus=Lus10040013.g ID=Lus10040013.BGIv1.0 annot-version=v1.0 MDVEATPGNKAQKPPHKQSPGQVMGPSYMGRKERANCICGDPRPIQLQVESVPPVDTFVRSFFGLLVLEALTTENCQERLSLERLEILGDAFLKFAVGHC LFLLSDALGEGELTNKRSNAVNNSNLFKLAIRSNLQAYIRDQPFDPCQFFALGRPCSVICTKESEGSIHDLTGRSSRDHPNSEVRCNKGHYWLQKKTIAD LVEALVGGFIVDSGFKGATAFLKWIGIKVGFDPSQVSKICAASCRYMPLSASVGITALENSLGYSFHHKVYPRLKPDHLTDLRSALVNNRAFANVAVVRS FHKFLISESSALSEAIQAYVDFVEAAPREGGLSEGPRCPKVILEILACSFLTFFLYNVRLPISSILLVGNVDC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10040013 [exp]	0	1
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10003426 [exp]	4.5	0.7930
AT3G49990			unknown protein		Lus10015447 [exp]	7.3	0.8093
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10016729 [exp]	7.7	0.8303
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Lus10022925 [exp]	7.7	0.7728
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	11.4	0.7901
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030624 [exp]	17.5	0.7495
AT3G57570			ARM repeat superfamily protein...		Lus10026305 [exp]	19.7	0.6881
AT5G27110			Tetratricopeptide repeat (TPR)...		Lus10036029 [exp]	20.0	0.7861
AT5G08680			ATP synthase alpha/beta family...		Lus10024114 [exp]	20.5	0.7234
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	21.9	0.7723

Compare expression of checked genes

Lus10040013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.