Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35180 1029 / 0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G45560 325 / 5e-100 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT4G19040 323 / 3e-99 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT3G54800 273 / 1e-80 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT1G06050 208 / 6e-61 Protein of unknown function (DUF1336) (.1) AT2G28320 216 / 4e-60 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT5G10750 189 / 5e-54 Protein of unknown function (DUF1336) (.1) AT5G25010 174 / 7e-49 Protein of unknown function (DUF1336) (.1) AT5G24990 171 / 9e-48 Protein of unknown function (DUF1336) (.1) AT5G25020 134 / 5e-35 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019591 [exp] 1301 / 0 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040011 [exp] 848 / 0 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019585 [exp] 780 / 0 AT5G35180 744 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 689 / 0 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10012149 [exp] 319 / 9e-98 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10007596 [exp] 319 / 1e-97 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10021465 [exp] 219 / 7e-61 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10016094 [exp] 218 / 1e-60 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10008154 [exp] 197 / 3e-57 AT1G06050 362 / 5e-126 Protein of unknown function (DUF1336) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113100 [exp] 1077 / 0 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.001G132900 [exp] 319 / 7e-98 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.003G100600 [exp] 311 / 5e-95 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G213000 [exp] 296 / 8e-89 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G038800 [exp] 288 / 3e-86 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.010G223400 [exp] 215 / 9e-60 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 214 / 4e-59 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.007G130400 [exp] 191 / 8e-55 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.017G027700 [exp] 190 / 2e-54 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.018G014234 [exp] 175 / 7e-49 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0209 [flax] [poplar] PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10040015 pacid=23173443 polypeptide=Lus10040015 locus=Lus10040015.g ID=Lus10040015.BGIv1.0 annot-version=v1.0 ATGGAGGACGCGGTTGGGATAACGGAGACGGAGGTGACAGTTAGGAACTTAGGAAGAAGCGTACGATCGGAGAAGGAAATGTTTGGTAGTGGCGGCAGCA GCAGTAGTGGGGACGATAAGATGGATAAAGGTGGATTCGAGTATTTCGGCTGGATTTATCATTTAGGGACCAATTCGATCGGTCACGAGTACTGCCATTT GCGCTTCTTGTTCATCAGAGGGAAGTATGTGGAGATGTACAAGCGTGATCCTCACGAGAACACCGGCATTAAGCCAATTAGGAGGGGTGTGGTAGGACCT ACCCTTATGGTCGAGGAGCTAGGGCGTAGGAAGGTCAATCAGGGGGATGTTTATGTCATACGCTTCTATAGCCGACTGGATGAGACAAAGAAAGGAGATA TTGCTTGTGCTACAGCTGGAGAAGCTCGAAAATGGATGGAAGCATTTGATCATGCAAAACAACAGGCTGAATTTGAGCTCTCAACCAGTCGGAATGCAAG AAACAATTTAAGCATTGAAAATGAGATCGATTTAGAAGGTCGTCGACCCAGAATAAGGCGCTATGCACACGGATTAAAAAGGCTTATCAGGATAGGGCAA GGTCCCGAAACATTGTTGCAGCAAGGCTCGAATTTGGTTGGCAACGCAAAGTCAGATGGATTTTTTGATGCTGATAGCGAAGATGTAACCGAAGTACACC GGTGGAGATGTGTGCGCACAGTAAACGGTGTTCGAATCTTTGAGGATGTGTCAAATGCCAAGGGTAATAAGGGTACTCTTGTAAAAGCGGTTGGTGTTGT TGATGCAAGTGCTGATACTGTCTTTGACGTGTTCTTAAACCTTGATCAACATCAAAGATATGAATGGGACACGTTGACAGGGGACTTGGAGCTCTTAGAT TCCTATGATGGACACTATGATGTTTTGTATGGCACATATGACCAGAAGTATCTTACCCGGTGGAAATCCAATAGAGATTTTGTTTTCTCGAGGCAATGGT TCCGTGGACAAGATGGGACATACACAATTCTGCAGTTTCCTGCTGTGCATAAGAAGAGACCTCCATGCTCTGGATATCAACGAACGAAAATAAACCCTTG CAGTTGGGAGATAAGAAATCTGAGTCCCACAGTGGGTTCAATCAAATCTCTCGTCATCCAAATGGTAGAGACAAATCAAGTTGGTTGGTATAGATGGAAA CAAAACAGCTTCACCAAGTTTGAAAATTCTATCGCTTATGCATTGTTGGCGCAAGTGGCAGGTTTGAAAGAATATATAGGAGCAAGTCCAGCATTGAGAG TTGAATCTTCCACAACGGTTGTTCGTTCAAAAATTTCTGAGGGGAACATTGGCGCCATTGACTATAATGATGCAGAAGTCAAAGACGAGTTTTATGATGC AATTGCCGGGGACTCATCATCATCGTCACCGTCATCATCAGATGAAGAGGATGGTGGTAGTAATAAAAAACCAGCCAAGAAGGACAGGAGAGTGAAACTC AAGAATGTTTCATGGGCCATTGCAAGCTTTTCTTTGAAGAGAACTTCAGCTGCAAATGCAAATGCTATTTTAGATCCCAATGTACCCCCAATCAGTATTG AACCAAGTGACTTCAATGGTTCTCTTCACAAGGGGAAGGATCAAAATGATTCAAACTGTTGGACTTCACCAAGTGGCTCAGGATTTAAGATCCGAGGGAA GACTTATGTCAAAGATAACGCAAAGGTGGTGGGTGGAGATCCTCTTCTCCAGCTCATAGCAGTTGATTGGTTCAAAGTTGATAGAGCTGCAGATGGGATT GCACAGCATCCGAAGTGTCTATTGCAGACAAAAGCTGGGAAGAAGCTTCCTTTTGTTCTGGTTATTAATTTACAGATTCCAGCAAAACCCAACTACAGTT TGGTACTCTACTACGCCGCAGATAGGCCAGTGAAAGAGGAATCTCTGCTGGGAAAATTCATAGATGGCACAGATATGTTTCGGGATTCGAGATTCAAGCT GATTCCCAGTATCATTGAGGGTTATTGGATGGTGAAACGTGCTGTTGGATCTAAAGCTTGCCTGTTGGGCAAAGCTGTAACTTGCAAGTACCTCAGACAA GACAATTTCCTGGAGATCGATGTGGATATCGGGTCATCATCAGTTGCCAGAAGTATAATTGGGCTTGTTCTAGGATACGTTACAAGTTTAGTTGTTGATC TAGCGATTCTCGTTGAGGCAAAGGAAGAGGCAGAGCTGCCGGAGTTTATCCTAGGTACCGTCAGACTAAACAGACTCAAGCCTGAGAGTGCTATACCTTT GGAGATGTGA
AA sequence Show only first row Show all	>Lus10040015 pacid=23173443 polypeptide=Lus10040015 locus=Lus10040015.g ID=Lus10040015.BGIv1.0 annot-version=v1.0 MEDAVGITETEVTVRNLGRSVRSEKEMFGSGGSSSSGDDKMDKGGFEYFGWIYHLGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENTGIKPIRRGVVGP TLMVEELGRRKVNQGDVYVIRFYSRLDETKKGDIACATAGEARKWMEAFDHAKQQAEFELSTSRNARNNLSIENEIDLEGRRPRIRRYAHGLKRLIRIGQ GPETLLQQGSNLVGNAKSDGFFDADSEDVTEVHRWRCVRTVNGVRIFEDVSNAKGNKGTLVKAVGVVDASADTVFDVFLNLDQHQRYEWDTLTGDLELLD SYDGHYDVLYGTYDQKYLTRWKSNRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPCSGYQRTKINPCSWEIRNLSPTVGSIKSLVIQMVETNQVGWYRWK QNSFTKFENSIAYALLAQVAGLKEYIGASPALRVESSTTVVRSKISEGNIGAIDYNDAEVKDEFYDAIAGDSSSSSPSSSDEEDGGSNKKPAKKDRRVKL KNVSWAIASFSLKRTSAANANAILDPNVPPISIEPSDFNGSLHKGKDQNDSNCWTSPSGSGFKIRGKTYVKDNAKVVGGDPLLQLIAVDWFKVDRAADGI AQHPKCLLQTKAGKKLPFVLVINLQIPAKPNYSLVLYYAADRPVKEESLLGKFIDGTDMFRDSRFKLIPSIIEGYWMVKRAVGSKACLLGKAVTCKYLRQ DNFLEIDVDIGSSSVARSIIGLVLGYVTSLVVDLAILVEAKEEAELPEFILGTVRLNRLKPESAIPLEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35180			Protein of unknown function (D...		Lus10040015 [exp]	0	1
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	2.4	0.8248
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	3.5	0.8114
AT5G42320			Zn-dependent exopeptidases sup...		Lus10016010 [exp]	4.2	0.8157
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10021310 [exp]	4.6	0.8017
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	6.0	0.7554
AT5G23870			Pectinacetylesterase family pr...		Lus10039238 [exp]	7.5	0.7936
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	12.0	0.7763
AT5G41140			Myosin heavy chain-related pro...		Lus10008012 [exp]	16.9	0.8058
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10014661 [exp]	21.2	0.7401
AT2G16750			Protein kinase protein with ad...		Lus10025103 [exp]	22.6	0.7769

Compare expression of checked genes

Lus10040015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.