Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07690 1006 / 0 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT4G02060 300 / 2e-91 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT1G44900 296 / 2e-88 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G44635 293 / 9e-88 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G46280 288 / 2e-86 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT2G16440 286 / 2e-85 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT3G09660 232 / 4e-66 MCM8 minichromosome maintenance 8 (.1) AT2G14050 229 / 1e-65 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019592 [exp] 1301 / 0 AT2G07690 1075 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10009052 [exp] 296 / 4e-86 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10009683 [exp] 295 / 8e-86 AT1G44900 963 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10002427 [exp] 284 / 2e-85 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10001452 [exp] 284 / 2e-85 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10038384 [exp] 283 / 2e-84 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10028795 [exp] 283 / 3e-84 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10036244 [exp] 282 / 6e-84 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10015267 [exp] 287 / 2e-83 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188700 [exp] 1144 / 0 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.018G112800 [exp] 1141 / 0 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.001G070500 [exp] 297 / 2e-88 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.001G074000 [exp] 292 / 2e-87 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.014G121000 [exp] 283 / 3e-85 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.009G121500 [exp] 285 / 7e-85 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.004G131600 [exp] 277 / 1e-82 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.006G131900 [exp] 254 / 7e-74 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.019G014403 [exp] 234 / 1e-67 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 71 / 5e-15 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10040017 pacid=23173393 polypeptide=Lus10040017 locus=Lus10040017.g ID=Lus10040017.BGIv1.0 annot-version=v1.0 ATGTCAGGTTGGGATGAAGGAGCAGTATACTATAGCGACCAAGCGCAGTTCCCTGAATCCGGAACCGATAGCGGCGTTGGTGGTGGCGCCCCTAGTCGCC ACACTGTCCTCCGGAAGTTCAAGGAGTTCATCAGAAACTTCGAGGCCGAGAAGAACGTGTTCCCTTACCGTGAGAGCCTCGTTCACAACTCTAGGTCTCT CCTTCTCCACCTCGACGTTCTGCTCGCTTTCGATGCTAATCTCCCTCCCGACCTCCGCTCCTCTCCGGCGGACTACCTACCTCTGTTCGAGACAGCGGCG GCGGAGGTTCTCCAGGGTTTGAGGTTGAAGAAGATGGCTGACGACGGAGAAATGAAGGAGCCGGAGACCGGAGAAGTGCAGATACTACTGAGCTCTAAGG AGGATCCGGTTTCCATGAGAGCCCTAGGGGCACAGTACATCTCGAAGCTGGTGAAGATATCTGGAATCACAATTGCGGCATCACGAGTGAAGGCAAAGGC CACTTATGTGAGCTTGGTGTGTAAAAACTGCCAGAGCACAAAGGAAGTTCCTTGTCGCCCAGGGCTTGGAGGTGCAATAATGCCTCGTTCTTGTGACCAT ATTCCTCAGCCTGGTGAAGAACCGTGCCCTCTTGATCCTTGGATAATTGTTCCTGATAAAAGTAAATATGTCGATCAGCAGACCTTGAAATTGCAAGAGA ACCCGGAGGCTAATGATTTTCCATTTTGCAGCAATAGAGGGGCTGTTGCAGTTAGGCAGCCTTATATAAGAGTTGTAGGGATGGAAGAAACCAATGAAGC CAGTAGTCGTGGTCTTGCATCTTTTACACAAGAAGAGGAAGAAGAATTTAGAAGATTTGCCTCCAGAACAGATGTGTATGAAGCCATATGCTCTAAGGTT GCACCATCCATATTTGGGGAAGAAAATGTGAAAAAGGCTGTGGCTTGCCTCTTGTTTGGAGGTTCAAGGAAGCACCTGCCTGATGGGGTGAAGTTAAGAG GTGATATCAATGTGTTGCTTTTAGGAGACCCATCTACAGCTAAATCACAGTTTCTCAAGTTTGTTGAAAAGACAGCTCCTATTGCTGTTTATACTTCTGG GAAAGGTTCATCAGCTGCTGGTTTGACAGCTTCTGTGATACGAGATGGAAACTCACGTGAATTTTATCTTGAAGGAGGAGCTATGGTTCTGGCAGACGGC GGTGTTGTGTGTATAGATGAGTTTGACAAGATGAGGCCAGAGGATAGGGTATCTATTCATGAAGCAATGGAGCAGCAAACGATATCTATTGCAAAAGCAG GAATTACAACTGTTCTTAATTCCAGAACTTCAGTACTCGCAGCTGCTAACCCTCCATCTGGACGCTATGATGATCTCAAGACTACCCAAGAAAATATTGA TTTGCAAACAACGATTCTTTCCCGATTCGACTTAATTTTCATAGTGAAAGACAGAAGAGACATGAAGCGAGATAAGATGATAGCCAGCCATATCATAAAA GTTCATGCATCTGCTGATCAAACATCCATGGAACACAAGCCTTCTAAAGAAGATAACTGGTTGAAGAGGTACATACAGTTTTGCAGGACAACGTGTCGCC CTCGTCTTTCTGAAGCAGCAGCCAATAAACTTCAAAATGAATACATCACATTCAGACAGAACATGAGAAGGCAAGCAAATGAAACAGGGGAAGCAGCTGC TGTCCCCATCACTGTAAGGCAACTGGAAGCTATCATAAGGCTGAGCGAATCTCTCGCAAAGATGAAACTGTCACAAATAGCCACCGAGGCGGACGTACTT GAAGCTCTAAAGTTGTTCAAGGTGTCAACCATAGAGGCAGCACAGTCTGGTATAAACCAGCATGTGACTTCTACACCAGAAATACAGCAAGCTGAAACTC AGATCAAAAGAAGGATGGGGATAGGATCGAGGCTTTCAGAGAGGAGGCTGATCGACGAGCTCAGTAGGATGGGGTTGAATGAATCAATTGTGAGAAGAGC TCTTATAGCCATGAACCAGAGGGATGAAATCGAGTACTCGCGTGAAAGGCGCATCATTATTCGAAAGCTATAG
AA sequence Show only first row Show all	>Lus10040017 pacid=23173393 polypeptide=Lus10040017 locus=Lus10040017.g ID=Lus10040017.BGIv1.0 annot-version=v1.0 MSGWDEGAVYYSDQAQFPESGTDSGVGGGAPSRHTVLRKFKEFIRNFEAEKNVFPYRESLVHNSRSLLLHLDVLLAFDANLPPDLRSSPADYLPLFETAA AEVLQGLRLKKMADDGEMKEPETGEVQILLSSKEDPVSMRALGAQYISKLVKISGITIAASRVKAKATYVSLVCKNCQSTKEVPCRPGLGGAIMPRSCDH IPQPGEEPCPLDPWIIVPDKSKYVDQQTLKLQENPEANDFPFCSNRGAVAVRQPYIRVVGMEETNEASSRGLASFTQEEEEEFRRFASRTDVYEAICSKV APSIFGEENVKKAVACLLFGGSRKHLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDGNSREFYLEGGAMVLADG GVVCIDEFDKMRPEDRVSIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTTQENIDLQTTILSRFDLIFIVKDRRDMKRDKMIASHIIK VHASADQTSMEHKPSKEDNWLKRYIQFCRTTCRPRLSEAAANKLQNEYITFRQNMRRQANETGEAAAVPITVRQLEAIIRLSESLAKMKLSQIATEADVL EALKLFKVSTIEAAQSGINQHVTSTPEIQQAETQIKRRMGIGSRLSERRLIDELSRMGLNESIVRRALIAMNQRDEIEYSRERRIIIRKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	0	1
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	1.7	0.9814
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	2.0	0.9802
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	3.0	0.9680
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	3.5	0.9793
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	3.5	0.9764
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	4.5	0.9760
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	4.9	0.9741
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	5.3	0.9732
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	5.7	0.9701
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	6.5	0.9646

Compare expression of checked genes

Lus10040017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.