Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) AT3G12760 100 / 1e-25 unknown protein AT3G28970 48 / 2e-06 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019598 [exp] 392 / 2e-140 AT1G15860 285 / 4e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10039198 [exp] 290 / 9e-100 AT1G15860 369 / 2e-131 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10013742 [exp] 289 / 5e-98 AT1G15860 367 / 5e-129 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10026216 [exp] 194 / 3e-63 AT1G15860 252 / 3e-86 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10000875 [exp] 100 / 2e-25 AT3G12760 383 / 3e-136 unknown protein Lus10009599 [exp] 100 / 3e-25 AT3G12760 380 / 3e-135 unknown protein Lus10030685 [exp] 49 / 1e-06 AT3G28970 255 / 4e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10005235 [exp] 48 / 3e-06 AT3G28970 258 / 1e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G112200 [exp] 314 / 2e-109 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.003G180300 [exp] 278 / 5e-95 AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.001G047900 [exp] 276 / 2e-94 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.008G083800 [exp] 98 / 1e-24 AT3G12760 415 / 1e-148 unknown protein Potri.017G084300 [exp] 49 / 7e-07 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.004G122100 [exp] 48 / 2e-06 AT3G28970 296 / 3e-100 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF03556 [flax] [poplar] Cullin_binding Cullin binding
Representative CDS sequence Show only first row Show all	>Lus10040019 pacid=23173539 polypeptide=Lus10040019 locus=Lus10040019.g ID=Lus10040019.BGIv1.0 annot-version=v1.0 ATGCCTCGCGCGTCAAAGAGGAAAGCTGCCCCGCCCAACTCCGCCGTCAATCCACCCTTGTCCGATCAAACTTGCACTCGCTCCACCACTAATAAAGGGA AAATTCGGTTAAAGGAGAGTGACCTGATCGACAGGCTATTTGATTCTTACGAAAACACCTCACTGGGCATGATTGACCCAGAAGGAGTTGAAACATTATG TTCAGACATGAAAGTTGGATACGCTGATGTGAGGATCCTGATGCTTGCATGGAAAATGAAAGCTAAGCAGCAGGGATACTTTACCAGGGATGAGTGGCAA ACAGGCTTGAAGGCGCTTAAGGCTAATACTATCTTGAAGCTTGTGAAGTCACTGTCAACACTCCAGAAAGAGGTGGAAGCGCCAGAAAATTTTGAAGATT TCTACTCATTTGCATTCAAGTACTGCCTTACAGAAGAGAAGCAAAAAGGCGTAGACATCGAAACCATCTACGAATTACTGAAAATAGTCCTCGGATTGCA GTTCCGTACACAGGTTGATTCACTAGTTGAGTACCTAAAGGTCCAAAAAGATTACAAAGTGATAAATAACGATCAGTGGATAGGTTTCCTTCGGTTCTGC AAGGAGATTACGTTTCCAGATCTCGGAGACTATGATGAGAACCAAGCTTGGCCGTTGATCCTTGACAATTTTGTAGACTGGATGAAGAAGAAAACCAGAT AG
AA sequence Show only first row Show all	>Lus10040019 pacid=23173539 polypeptide=Lus10040019 locus=Lus10040019.g ID=Lus10040019.BGIv1.0 annot-version=v1.0 MPRASKRKAAPPNSAVNPPLSDQTCTRSTTNKGKIRLKESDLIDRLFDSYENTSLGMIDPEGVETLCSDMKVGYADVRILMLAWKMKAKQQGYFTRDEWQ TGLKALKANTILKLVKSLSTLQKEVEAPENFEDFYSFAFKYCLTEEKQKGVDIETIYELLKIVLGLQFRTQVDSLVEYLKVQKDYKVINNDQWIGFLRFC KEITFPDLGDYDENQAWPLILDNFVDWMKKKTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15860			Domain of unknown function (DU...		Lus10040019 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10036716 [exp]	4.9	0.7638
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10036179 [exp]	9.2	0.8085
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10005890 [exp]	15.3	0.7078
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	16.5	0.8356
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10038906 [exp]	37.0	0.7086
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10002734 [exp]	60.1	0.7457
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10003540 [exp]	75.5	0.7054
AT4G23950			Galactose-binding protein (.1....		Lus10032405 [exp]	86.7	0.7355
AT5G55610			unknown protein		Lus10016608 [exp]	89.3	0.7172
					Lus10023382 [exp]	92.6	0.6893

Compare expression of checked genes

Lus10040019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.