Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 245 / 5e-77 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23290 242 / 2e-76 CRK21 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) AT4G23150 243 / 3e-76 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23240 234 / 7e-76 CRK16 cysteine-rich RLK (RECEPTOR-like protein kinase) 16 (.1) AT4G23230 234 / 3e-74 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G11530 238 / 4e-74 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23140 237 / 6e-74 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23270 235 / 2e-73 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G21380 238 / 4e-73 ARK3 receptor kinase 3 (.1) AT4G23220 236 / 6e-73 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019599 [exp] 389 / 2e-138 AT4G23290 180 / 6e-53 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) Lus10019061 [exp] 403 / 5e-137 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10036314 [exp] 268 / 3e-89 AT4G23180 315 / 6e-102 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10024081 [exp] 260 / 1e-81 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10041639 [exp] 259 / 3e-81 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 233 / 3e-75 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10036313 [exp] 233 / 1e-74 AT4G03230 241 / 9e-71 S-locus lectin protein kinase family protein (.1) Lus10007602 [exp] 241 / 3e-74 AT1G65800 788 / 0.0 receptor kinase 2 (.1) Lus10023391 [exp] 244 / 4e-74 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111900 [exp] 377 / 2e-126 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111700 [exp] 367 / 9e-123 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111800 [exp] 365 / 3e-122 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111751 [exp] 307 / 3e-106 AT4G23290 255 / 2e-81 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) Potri.018G111600 [exp] 323 / 1e-105 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.005G014802 [exp] 255 / 2e-82 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.011G125201 [exp] 244 / 2e-81 AT4G27300 328 / 1e-107 S-locus lectin protein kinase family protein (.1) Potri.004G023550 [exp] 250 / 7e-79 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.001G441400 [exp] 251 / 2e-78 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.011G027900 [exp] 246 / 7e-78 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040020 pacid=23173490 polypeptide=Lus10040020 locus=Lus10040020.g ID=Lus10040020.BGIv1.0 annot-version=v1.0 ATGCTGGTGTACGAATTCATGCCCAACAAAAGCCTCGACCTCTATCTTCTGGATCCAGTGAGGAAGCTAAGGTTAGACTGGAACAAGAGGGTTAGGATCA TTGAAGGAGTGACTCAGGGGCTATTGTACCTTCAGGAGTACTCAAACTTCACCATAATTCATAGGGATCTCAAGGCGAGCAACATCCTTCTGGATGATAC CATGAACCCTAAGATCTCCGATTTTGGGATGGCCAAGCTCTTTAGGAAAGATATCGATGAAGCCAGCACTAGCAATATTGTGGGAACATATGGATACGTT CCACCTGAATATGTCAAGAAAGGGATATACTCTATGAAATACGATGTCTACAGCTTCGGAGTTTTGCTCCTGCAAATTGTCAGTGGTAAAAGAACCAGAC TTTACTATGGTCCCAATCAAGACATGCATCTCTTGGAACATGCTTACGAATGTTGGAAGGGTGGTAAAGGAACCGACTTCTTTGACCCGTCATTAGACGA TTCGGCATCACAATGTAAGCTGGTGACATGTCTACAAGTGGCGTTGCTGTGCGTTCAGGAGAATCCTGACGAGAGGCCGACAATGTTGGAAGTGTCATCT GCACTGAGAAATGGTGCAGCAGCTTTGGAAATGCCTGTTCCAAAAAGACCAGCCTTTTCCGTGTCTAAGGTAAGCGAAAAGGGATCTGCAACGAGTTCCA GGCCAGAAACTACTTCGTTCAACGACGCTGAAATATCTCAACTAGAACCTCGTTGA
AA sequence Show only first row Show all	>Lus10040020 pacid=23173490 polypeptide=Lus10040020 locus=Lus10040020.g ID=Lus10040020.BGIv1.0 annot-version=v1.0 MLVYEFMPNKSLDLYLLDPVRKLRLDWNKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKASNILLDDTMNPKISDFGMAKLFRKDIDEASTSNIVGTYGYV PPEYVKKGIYSMKYDVYSFGVLLLQIVSGKRTRLYYGPNQDMHLLEHAYECWKGGKGTDFFDPSLDDSASQCKLVTCLQVALLCVQENPDERPTMLEVSS ALRNGAAALEMPVPKRPAFSVSKVSEKGSATSSRPETTSFNDAEISQLEPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10040020 [exp]	0	1
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10040021 [exp]	5.6	0.9022
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	15.4	0.9209
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	21.7	0.9205
AT4G35110			Arabidopsis phospholipase-like...		Lus10026277 [exp]	24.5	0.9177
					Lus10014873 [exp]	25.4	0.9134
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	26.3	0.9163
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10028527 [exp]	28.9	0.8991
					Lus10026056 [exp]	35.1	0.9120
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	35.7	0.9132
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	35.7	0.9129

Compare expression of checked genes

Lus10040020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.