Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19810 240 / 2e-74 ChiC class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19800 218 / 6e-66 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19820 217 / 7e-66 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19720 201 / 9e-60 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19750 197 / 2e-58 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19760 187 / 3e-54 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19730 173 / 2e-49 Glycosyl hydrolase superfamily protein (.1) AT4G19770 157 / 1e-44 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19740 112 / 3e-28 Glycosyl hydrolase superfamily protein (.1) AT1G61420 63 / 3e-10 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019061 [exp] 441 / 1e-147 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10019600 [exp] 384 / 9e-133 AT1G61420 71 / 1e-18 S-locus lectin protein kinase family protein (.1) Lus10019060 [exp] 221 / 1e-64 AT4G19810 437 / 1e-149 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036315 [exp] 213 / 5e-64 AT4G19820 253 / 3e-81 Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036306 [exp] 200 / 4e-59 AT4G19810 397 / 6e-138 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10024081 [exp] 198 / 4e-55 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10041639 [exp] 196 / 2e-54 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10036311 [exp] 181 / 8e-52 AT4G19810 377 / 5e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10003408 [exp] 164 / 2e-48 AT4G19770 98 / 5e-26 Glycosyl hydrolase family protein with chitinase insertion domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111900 [exp] 487 / 3e-165 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111800 [exp] 372 / 9e-121 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111700 [exp] 371 / 2e-120 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111600 [exp] 320 / 7e-101 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.006G188400 [exp] 237 / 1e-73 AT4G19810 477 / 2e-169 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G188300 [exp] 218 / 6e-66 AT4G19810 379 / 2e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G112100 [exp] 189 / 7e-55 AT4G19810 279 / 3e-91 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G112000 [exp] 188 / 1e-54 AT4G19810 284 / 3e-93 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G261800 [exp] 156 / 6e-42 AT4G19810 286 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G262001 [exp] 150 / 2e-40 AT4G19810 283 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10040021 pacid=23173521 polypeptide=Lus10040021 locus=Lus10040021.g ID=Lus10040021.BGIv1.0 annot-version=v1.0 ATGGCTACCATTCCACTCCTCCTCTTCTTCTTCTTACTTGCATCCTTCAACATACAGACCTCCACCGCTCAACAACCGCGTATAAAATCCGGATACTGGT ACTACGACAGCGACTTCCCAAGCTCTGACATTGACTCAACACTCTTCACTCACATCATCTGCGGATTCTCCTCTCTCAACTCCACCACTTCAACCCTCTC CTTACCTCCCGATTCCCTCCCCAAATTCTCCAACTTCACCGCCACCGTCCGCCGCCGCAACCCCACCGTAGTCACATTACTCTCTGTCTGGAATGGCCAG CCAGAGACTTACTCTGCCATCATCGGCAAAAACGTTACCAATCCAGTCCTCTCCCTCATGGCTTCCAATCCTTCCTCGAGGAGTTCGTTCATCCAGTCCT CAATTCGAACTGCCAGAACATTAGGATTCCAAGGAATCGATTTGTTCTGGCTGTGGCCTAATGATACGGATACTGCTAACATCGGAAACCTATTGGACGA ATTCAAGTCCGCAATCAATTCTGATGCCAGAAGAAATTCCAATTCCAGTCTAACCCTAACCATGGCGATTCGATACTCTCCCAATCTCATCAGCTACCCT ATCCAGTCCATGGTGAGGAATCTTGATTGGGCGCACCTCGTGGCCTACGATTACCACTTGCCGACGAGAGAGAATTTCACCGGAAACCATGCAGCGATCT TCGGCGGAAATATCTCCACCGATTTCGGGCTGAAGGAGTGGATTCGGGTCGGGTTTCCAGCAAACAAGATGGTGTTGGGGCTGGCGTACCATGGATACGC GTGGAAGCTGGCGAATCCGGGGAACTCGACGGTGGGAGCTCCGTCGACGGGGCCGGCAGTGACGATTGCTGGAGACATGGGGTACAAGTTGGTGAAATCA TTCATTCAGAACTACGGATTCGGAGCAAAGGCGATGTATAATTCAGGTAGAGTAGTGGATTATTTCGTTGTGGGACCGACTTGGATAAACTACGACGATG TGGAATCGATGAGGGCTAAAGTTGGTTACGCCATGGGAAAGGGACTCCTCGGCTTCAATGCTTTCCAGTTGAGTAATGACGACAACTGGGAGCTAACCCG CGCAGCTCAGTTAATGGAGATTGACATGGAGGAAGGTGGTAACAAGAAGCGGCACCAACTGTTGCTGAAAATCCTGCTTCCAATTGCTGCCGCCATTGCT CTATTATTCGCCATCTTCCTTGTCTGCTTCAGGAGGAAGCATAAAGGTAACAACACAGAATCTAATAGTGCAGAATGCCATCTGTTGTCCAGCTCTAAGC CATTCGGTGGGGGAGACCCTCCGTATCTGAAAGCATTCACCTTCTCCGACATCAAAACCGCTACCAACGACTTCTCTGGCGATAACTTGCTTGGCTCTGG CGGCTTTGGGCCTGTTTACAAGGGCGTGTTAGATGGAGGGGAGGAAATAGCAGTGAAAGACTATCGGAATCATCAACTCAAGGACATGAAGAATTCAGGA ACGAGGTTTCTCTCACGGCTAGGCTTCAGCATGTCAATCTAG
AA sequence Show only first row Show all	>Lus10040021 pacid=23173521 polypeptide=Lus10040021 locus=Lus10040021.g ID=Lus10040021.BGIv1.0 annot-version=v1.0 MATIPLLLFFFLLASFNIQTSTAQQPRIKSGYWYYDSDFPSSDIDSTLFTHIICGFSSLNSTTSTLSLPPDSLPKFSNFTATVRRRNPTVVTLLSVWNGQ PETYSAIIGKNVTNPVLSLMASNPSSRSSFIQSSIRTARTLGFQGIDLFWLWPNDTDTANIGNLLDEFKSAINSDARRNSNSSLTLTMAIRYSPNLISYP IQSMVRNLDWAHLVAYDYHLPTRENFTGNHAAIFGGNISTDFGLKEWIRVGFPANKMVLGLAYHGYAWKLANPGNSTVGAPSTGPAVTIAGDMGYKLVKS FIQNYGFGAKAMYNSGRVVDYFVVGPTWINYDDVESMRAKVGYAMGKGLLGFNAFQLSNDDNWELTRAAQLMEIDMEEGGNKKRHQLLLKILLPIAAAIA LLFAIFLVCFRRKHKGNNTESNSAECHLLSSSKPFGGGDPPYLKAFTFSDIKTATNDFSGDNLLGSGGFGPVYKGVLDGGEEIAVKDYRNHQLKDMKNSG TRFLSRLGFSMSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10040021 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10040020 [exp]	5.6	0.9022
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039401 [exp]	10.7	0.7890
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10035438 [exp]	22.0	0.7947
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	22.5	0.8301
AT2G48030			DNAse I-like superfamily prote...		Lus10029630 [exp]	52.6	0.7581
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	64.4	0.7438
AT1G67060			unknown protein		Lus10028484 [exp]	75.4	0.7661
AT3G19340			Protein of unknown function (D...		Lus10012581 [exp]	83.1	0.7860
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	103.9	0.7554
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037325 [exp]	143.5	0.7573

Compare expression of checked genes

Lus10040021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.