Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21800 510 / 0 QQT2 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G12790 87 / 5e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT5G22370 75 / 9e-15 QQT1, EMB1705 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019602 [exp] 677 / 0 AT4G21800 545 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036411 [exp] 84 / 2e-17 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10041086 [exp] 81 / 7e-17 AT4G12790 435 / 9e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10018675 [exp] 77 / 2e-15 AT5G22370 493 / 9e-178 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10007747 [exp] 76 / 2e-15 AT5G22370 396 / 1e-140 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G103000 [exp] 550 / 0 AT4G21800 527 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G148000 [exp] 543 / 0 AT4G21800 555 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G015700 [exp] 86 / 1e-18 AT5G22370 462 / 6e-166 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G174200 [exp] 85 / 2e-18 AT4G12790 432 / 5e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03029 [flax] [poplar] ATP_bind_1 Conserved hypothetical ATP binding protein
Representative CDS sequence Show only first row Show all	>Lus10040022 pacid=23173481 polypeptide=Lus10040022 locus=Lus10040022.g ID=Lus10040022.BGIv1.0 annot-version=v1.0 ATGGACATTGACGCAAACTCCGCCGATATTACTTCGTCGATGGAGGTAGACACCAAGGTACTTCCGTGCTGCGATTGCTTTTTCGTTGAGGGATACCTCC AACCCTTCTTTCTTTTCTGCAAATTTTTTCTTCACGGTATTGAGGGAGGCAAAGAGGAGCTTGCTAATTCAATGGACAAGCTAAACATTGACCCCAGCTC TTCGTCCTCCATTAAGTTCAATAAGAAACCTGTAATCATCATTGTCATTGGAATGGCAGGTAGTGGTAAAACAACTTTGCTTCATAGATTGGTTTGCCAC ACTCAGGCTTCAAATCTTCGTGGTTATGTCTTGAACCTCGACCCAGCAGTGATGACTCTTCCTTACGGTGCAAACATTGATATTAGGGATACGGTTAAGT ACAAGGAAGTGATGAATCAGTTTAATCTTGGACCAAATGGTGGAATCCTAACATCTCTTAATTTGTTTGCTACCAAGTTTGATGAGGTTGTTTCGATGAT TGAAAAGAGAGCTGATCAGCTTGACTATGTTCTAGTGGATACACCTGGTCAGATTGAGATCTTCACTTGGTCTGCTTCTGGAGCTATCATTACAGAAGCA TTTGCATCAACCTTCCCTACTGTGATTGCTTACGTAGTTGATACACCTCGTGCAACCAGCCCCATCACGTTCATGAGTAACATGCTTTACGCCTGTAGCA TTCTCTACAAGACGCGCTTGCCTCTTGTGTTGGCATTCAACAAGAATGATGTGTCCCAACACCAGTTTGCTGTGGAGTGGATGGAAGATTTTGAGGCCTT TCAAGCAGCACTAAGCTCCGATAACTCGTACACCTCGACCTTGACTGAAAGCCTTGCCCTTGTCCTCGATGAATTCTATAACAACTTGAAATCTGTTGGT GTTTCTGCTGTTACTGGAGCTGGTATGGATGCTTTCTTCAAGGCGATTGAAGCCAGCTCCCAGGAATACATGGAAACTTACAAGGCTGACCTTGATAAGA GGCGAGCAGAGAAGGAACGTCTAGAGGAAGAACGACGAAGGGAGAACATGGACAAGTTAAGGAAGGATATGCAAAAAACAAGGGGAGAAAAAGTAGTATT GAGCACTGGCTTGAAGGACAATGCAGGCAGCTCAATGAGCGGAATGGATGGAGCAGATAATGAGGATGAAGATTTTGAGAGGTTTAGTGAAGAGGAGTAT GATGAAGAAGAAGAAGATGCCATAGATGAGGATGAGGAGATTACGAGGTTCAACTTCTGA
AA sequence Show only first row Show all	>Lus10040022 pacid=23173481 polypeptide=Lus10040022 locus=Lus10040022.g ID=Lus10040022.BGIv1.0 annot-version=v1.0 MDIDANSADITSSMEVDTKVLPCCDCFFVEGYLQPFFLFCKFFLHGIEGGKEELANSMDKLNIDPSSSSSIKFNKKPVIIIVIGMAGSGKTTLLHRLVCH TQASNLRGYVLNLDPAVMTLPYGANIDIRDTVKYKEVMNQFNLGPNGGILTSLNLFATKFDEVVSMIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEA FASTFPTVIAYVVDTPRATSPITFMSNMLYACSILYKTRLPLVLAFNKNDVSQHQFAVEWMEDFEAFQAALSSDNSYTSTLTESLALVLDEFYNNLKSVG VSAVTGAGMDAFFKAIEASSQEYMETYKADLDKRRAEKERLEEERRRENMDKLRKDMQKTRGEKVVLSTGLKDNAGSSMSGMDGADNEDEDFERFSEEEY DEEEEDAIDEDEEITRFNF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	0	1
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10023781 [exp]	1.0	0.9118
AT2G35736			unknown protein		Lus10028935 [exp]	1.7	0.8979
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10021598 [exp]	2.4	0.9035
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10019602 [exp]	2.8	0.8945
AT1G76860			Small nuclear ribonucleoprotei...		Lus10042341 [exp]	4.4	0.8529
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Lus10019126 [exp]	5.2	0.8725
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001173 [exp]	5.3	0.8772
AT3G24150			unknown protein		Lus10019404 [exp]	6.3	0.8520
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10005729 [exp]	7.7	0.8691
AT1G15320			unknown protein		Lus10025746 [exp]	7.7	0.8402

Compare expression of checked genes

Lus10040022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.