Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15160 687 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019614 [exp] 909 / 0 AT3G15160 805 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G135800 [exp] 733 / 0 AT3G15160 683 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040027 pacid=23173471 polypeptide=Lus10040027 locus=Lus10040027.g ID=Lus10040027.BGIv1.0 annot-version=v1.0 ATGGGAGATCGGGACAAAGAGTGGGATTTTTATCTCCGGTCCTTATCCAACAGCGCGAGAGACTCCAACTTGGCTAGCGACCCCGCCTCCGATCCTTCTC TCCTCAATTCCGTGAGGAAGCTCTACCAGTTGTGTAAAGAAGAGAATTCAGAGGATTTGGTGGCTAGGGTATATCCGCACTTTAACAAGATCTTTCAGCG TTCCGTGGCTTCTCTTTCTCAATCGAGCTCGTCTTATGGACTTCTCTTGCTGGCTATAATCCAGTTTTTCCTCGACTTCGGAGAGATTGTTCTGCATGAT GCTGATCCCAGTTTAAGAACATTTTTCCGTTCATGTTTGAGTCGTGAATTTGCAGATGTAACCGTTGCAGAAGCAACACTTGAATTTCTGAATGTCAACA AGAGAAAGCTCCTGGCCTCTTATCCTGCGTTACTACCTCAATTTTTTCCACTGTTGCTGAAGTTGATAGCCTGGAATGGAGAAAAGTTGCAGAAATCATT CTTGAAGATTTTTCCAGAGTTAATATCGCCAGCTTCATTTCTTCCTCTATTTCCGTCCTTGGTGGATCTTCCTGTTTTAGTAGTGGCATTGGAAAGGGTG GAGAGAAGTTCAGGTTCCCTTATTGGGAGTAGTATTGCCTCAATCCAGAAGAGTAGTGCTCCTGAGATGTTACTTGCACTAATGGATGAAGCTTATACTG GTTCAACCATAGGTGATGGCGGTGGAGACAGTGGATCAGAGGAAGGCAATGCGATTGATGCAGGCGATCCTTTGTTTCTAGAACTTTTGAAGGATGAGAA TGATGGATTAGCTGAGCGTCATAGGACATCCCCCAGTATGGCTGCAGCTTTGCAAGCTGCGGTCAATGCTCCTCAATCTGATAGGCTAAAGCAATCGCTC AAAATAGCACCTCGGCTTCTTGATCTGTACTGTGCTATAGCAATCCGCGATGTCAATGACTCTTTAAATTGTGCCCTAATTCCATTGCTTATGGCAAGAA ATGATGCACTATTCCCTGACAAATATTACTGCTATCAGGTCCGTAAAAGGCTTTTGGAGTATATGCTGGCTTCGTTTCAGCGATCTCCAGATTTTATTGC TCTTTTGAAGAAACCAATTATGAACCGACTTGGAGAAGCTTATGACAGCCCGGCAAAGACAGAACTAGCATTACAGTTGTGTTGGGCGATAGGGGAACAT GGTGGTGGTGGCGCGTCCCACAAAGATGCTGCTCGCGAACTTTTTGAGAATTTAGAGCTACTTCTCTATGAAAACCTGTCGTCTAGCCGGCTTGGCTTGA ATTCAGCAATTGGCGAGAACGTGAGGAAGTCATCACAGTCGAGGCTTCTGTGTTTTGTTATAACAGCTATAGCGAAGCTGGCCACATATCACCGCGAATT GTTACCAAGAGCCCGTGTAGCTAGATCTCGCATATCAGATATAAGAGTTTGGAGGCGTGCCCGAGATTACTTAGGTTTGATCGATGATCCAGCAATTTCG TTGTCTGTTTTGGGACCTTGTCGGCCTTCACAAGGACACGTTCAAAAGCCAGGAACTGTGAACTGGAGTGATGGAGGAACCAAAATGATTGCACATATCC CCTTCTACCTTGTCGGTGAACAACAAGGCTCCCCAGTCCACGACTTCTCTTTCTCTGATATTTTCCCGATCAACAAGATGAGGAATCTAGGTTGA
AA sequence Show only first row Show all	>Lus10040027 pacid=23173471 polypeptide=Lus10040027 locus=Lus10040027.g ID=Lus10040027.BGIv1.0 annot-version=v1.0 MGDRDKEWDFYLRSLSNSARDSNLASDPASDPSLLNSVRKLYQLCKEENSEDLVARVYPHFNKIFQRSVASLSQSSSSYGLLLLAIIQFFLDFGEIVLHD ADPSLRTFFRSCLSREFADVTVAEATLEFLNVNKRKLLASYPALLPQFFPLLLKLIAWNGEKLQKSFLKIFPELISPASFLPLFPSLVDLPVLVVALERV ERSSGSLIGSSIASIQKSSAPEMLLALMDEAYTGSTIGDGGGDSGSEEGNAIDAGDPLFLELLKDENDGLAERHRTSPSMAAALQAAVNAPQSDRLKQSL KIAPRLLDLYCAIAIRDVNDSLNCALIPLLMARNDALFPDKYYCYQVRKRLLEYMLASFQRSPDFIALLKKPIMNRLGEAYDSPAKTELALQLCWAIGEH GGGGASHKDAARELFENLELLLYENLSSSRLGLNSAIGENVRKSSQSRLLCFVITAIAKLATYHRELLPRARVARSRISDIRVWRRARDYLGLIDDPAIS LSVLGPCRPSQGHVQKPGTVNWSDGGTKMIAHIPFYLVGEQQGSPVHDFSFSDIFPINKMRNLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15160			unknown protein		Lus10040027 [exp]	0	1
AT2G21630			Sec23/Sec24 protein transport ...		Lus10043359 [exp]	1.4	0.9029
AT5G11490			adaptin family protein (.1.2)		Lus10022125 [exp]	2.8	0.8871
AT2G07360			SH3 domain-containing protein ...		Lus10027588 [exp]	7.2	0.8713
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	7.7	0.8593
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	10.6	0.8587
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10027628 [exp]	10.8	0.8304
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	11.7	0.8865
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10013588 [exp]	12.5	0.8593
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10018844 [exp]	13.7	0.8127
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10038006 [exp]	14.7	0.7929

Compare expression of checked genes

Lus10040027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.