Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030116 [exp] 131 / 4e-36 ND / Lus10024523 [exp] 86 / 2e-20 ND / Lus10021195 [exp] 85 / 2e-19 ND / Lus10016291 [exp] 74 / 3e-16 ND / Lus10003825 [exp] 54 / 1e-08 ND / Lus10039941 [exp] 49 / 8e-07 ND / Lus10011622 [exp] 42 / 0.0002 ND / Lus10027695 [exp] 42 / 0.0005 AT4G18770 276 / 1e-87 myb domain protein 98 (.1) Lus10040024 [exp] 40 / 0.001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040028 pacid=23173402 polypeptide=Lus10040028 locus=Lus10040028.g ID=Lus10040028.BGIv1.0 annot-version=v1.0 ATGATGGAGGCCCAAGAAGCATTTATGAAGAAAATGGATGACAGAGATGAGATGATTTCAAGGATGGAGCTAGCCACCAGCACCCCCCTTGTCGAGGATG TAGAGTTTGACGGTGATGAGGAAATTCAAGACATACTCGTTATTACAGGACATATGGTAGTCATAGAGGAAGAAGATGAGCCCATCCTTGAAGAAAATGT AGTCGGTCATGATGAAAAGCTAGAAGATCATGAATGGCGCGGGAGTGAATTCCCTTTCCAATTATTAGCGGAAGAAGATGAAGATCTAGAAGATACACCA ATCATTAGAGAAGTTCACGATGTATGTGATGGTGAACTTGGAAAATGCAAATGGGATGGGTCTTCTTCAAGCTTTTGGGATGATGATGAAGATATGCGAG AACAAGTCATTGAGGAAATTCAAACTGTCTGTGATGACGAACTAGAAGAATTTGAAGAGGATTATAGTGAATATCTCTTCGAGACATTGTGGGAGGATGA AGCTCATACTTCAACTTTGGAAACTAATATCAAGCACCTAAACACCAAGGGTGATGAGGTCAGAGAAGGGGGACCACTCATGCTCAAATCAGAAGACTTT TCAAGTGGCATCATTGGTGTGGAGAAGGTTGAGGTTGTTGGTGGTGAAACACCCTTCTATCTCTTTCCTCCTCAAGCATATAAATTAAAAAAGAGAAGGT CATTATGGGATGGCAAACAGTGTTCGAGCAAGCTACTTCGGTTATTCCATCATCTGCTTCAATTGCTACTCGACACTCAACTTTTCACCATGAAGAAAGT GATGGCATTCAAGGAGGTGCTTAGTTAG
AA sequence Show only first row Show all	>Lus10040028 pacid=23173402 polypeptide=Lus10040028 locus=Lus10040028.g ID=Lus10040028.BGIv1.0 annot-version=v1.0 MMEAQEAFMKKMDDRDEMISRMELATSTPLVEDVEFDGDEEIQDILVITGHMVVIEEEDEPILEENVVGHDEKLEDHEWRGSEFPFQLLAEEDEDLEDTP IIREVHDVCDGELGKCKWDGSSSSFWDDDEDMREQVIEEIQTVCDDELEEFEEDYSEYLFETLWEDEAHTSTLETNIKHLNTKGDEVREGGPLMLKSEDF SSGIIGVEKVEVVGGETPFYLFPPQAYKLKKRRSLWDGKQCSSKLLRLFHHLLQLLLDTQLFTMKKVMAFKEVLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040028 [exp]	0	1
AT3G49060			U-box domain-containing protei...		Lus10039245 [exp]	3.3	0.7720
AT2G46520			cellular apoptosis susceptibil...		Lus10030423 [exp]	4.2	0.7229
AT5G45030			Trypsin family protein (.1.2)		Lus10036208 [exp]	6.3	0.7600
AT5G42905			Polynucleotidyl transferase, r...		Lus10005922 [exp]	6.5	0.7715
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	10.1	0.7710
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Lus10005022 [exp]	13.3	0.7372
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10019630 [exp]	13.6	0.7132
					Lus10024939 [exp]	16.4	0.7541
AT1G06320			unknown protein		Lus10038213 [exp]	21.3	0.6938
AT5G47900			Protein of unknown function (D...		Lus10019798 [exp]	22.6	0.7434

Compare expression of checked genes

Lus10040028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.