Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27080 703 / 0 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT3G20560 692 / 0 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 659 / 0 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT1G36050 88 / 9e-19 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G22290 80 / 4e-16 Endoplasmic reticulum vesicle transporter protein (.1) AT1G22200 79 / 8e-16 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G35620 57 / 1e-08 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT5G60640 57 / 2e-08 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G21750 57 / 2e-08 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT3G54960 56 / 3e-08 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019611 [exp] 899 / 0 AT4G27080 664 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10011157 [exp] 814 / 0 AT4G27080 718 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10043062 [exp] 793 / 0 AT4G27080 698 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10036158 [exp] 81 / 3e-16 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10021024 [exp] 80 / 4e-16 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10027795 [exp] 76 / 1e-14 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036449 [exp] 76 / 2e-14 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10023828 [exp] 61 / 5e-10 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10035503 [exp] 60 / 1e-09 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G419300 [exp] 764 / 0 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) Potri.011G135500 [exp] 762 / 0 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.006G023900 [exp] 88 / 6e-19 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.005G168800 [exp] 88 / 1e-18 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.016G022800 [exp] 87 / 1e-18 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.002G094400 [exp] 87 / 2e-18 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.001G206100 [exp] 79 / 1e-15 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 78 / 2e-15 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.008G040100 [exp] 66 / 2e-11 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.013G111400 [exp] 60 / 1e-09 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10040029 pacid=23173554 polypeptide=Lus10040029 locus=Lus10040029.g ID=Lus10040029.BGIv1.0 annot-version=v1.0 ATGGCGGGGCTTTCGTCAAGCAGGCTGAAATCTGTCGATTTCTACAGGAAAATACCAAGAGATCTGACGGAAGCATCATTGTCCGGTGCTGGACTATCCA TTGTAGCGGCACTCTCCATGATGTTTTTGTTTGGAATGGAACTGAGTAATTATTTAGCAGTAAGCACATCTACATCTGTGATCATTGACAAGAGTACTGA TGGTGACTTTCTACGCGTTGATTTTAATATCAGTTTTCCAGCCCTCTCCTGTGAATTTGCAGCAGTTGACCTAAGCGATGTATTAGGAACTAGCAGGTTA AATTTAACAAAAACAGTCAGAAAATTCTCTATAGATCACAATCTACAGCCCACTGGCTCTGAGTTTCACTCAGGCTCTGTTATGCATCTCATTAAGCATG ATGCTGATGTTGGTGAAGATGAGGTTGATGGTTCTGTGACGCTCAATTCTCGTAATTTTGATGGCTTCTCCAATCAGTTTCCTATATTGGTTGTTAATTT CTATGCTCCTTGGTGCTACTGGAGCAATCTCTTGAAACCTTCTTGGGAAAAGGCAGCTAAAATTATTGCAGAAAGATATGATCCTGAAACTGATGGACGC ATCATCTTGGCTAAAGTGGATTGCACTGATGAAGGTGAATTATGTCGGAGGGAAGACCATGGACAGCATGAACATGAGTCCTACTATGGGGATCGTGATA CTGAAACCTTGGTGAAGACTATGGAAAATCTTGTTGCACCTATTCCAGCTATACACCACACACTAGACAATTCAACCCAAAGTATCAAACGACCCGCACC CTCAACTGGTGGATGTAGAATCGAGGGTTATGTGCGTGTTAAAAAGGTTCCTGGCAACCTTATCATTTCAGCTCGCTCAGGATCCCATTCATTTGACGCT TCTCAAATGAACATGTCGCACGTTATTTCCCATCTGTCATTTGGTATGAAGTTCTCAGCCAGGCAAATGGATGATGCAAAGAGATTGATGCCATATATTG GTCGAAGCCATGATAGGTTGAATGGGCGGACATTTATTAATGAACGTGATATAGGTGCTAATGTAACTATAGAGCATTATCTTCAAGTAGTTAAAACCGA GGTGGTAACCAGAAGGCGATCTCGGGAGCACAAGATAATAGAAGAATACGAGTATACAGCTCACAGCAGCTTGGCGCAGAGTGTGGATATCCCTGTTGCA AAATTCCATTTTGAGCTCTCTCCGATGCAGGTTCTGATAACTGAAATCCCAAAGTCATTTTCCCATTTCATCACCAATGTGTGCGCCATTATTGGTGGGA TTTTCACGGTTGCGGGAATATTGGATTCGATTTTGCACAACACACTAAGGCTAGTGAAAAAGGTGGAGCTAGGCAAGAATTTTTGA
AA sequence Show only first row Show all	>Lus10040029 pacid=23173554 polypeptide=Lus10040029 locus=Lus10040029.g ID=Lus10040029.BGIv1.0 annot-version=v1.0 MAGLSSSRLKSVDFYRKIPRDLTEASLSGAGLSIVAALSMMFLFGMELSNYLAVSTSTSVIIDKSTDGDFLRVDFNISFPALSCEFAAVDLSDVLGTSRL NLTKTVRKFSIDHNLQPTGSEFHSGSVMHLIKHDADVGEDEVDGSVTLNSRNFDGFSNQFPILVVNFYAPWCYWSNLLKPSWEKAAKIIAERYDPETDGR IILAKVDCTDEGELCRREDHGQHEHESYYGDRDTETLVKTMENLVAPIPAIHHTLDNSTQSIKRPAPSTGGCRIEGYVRVKKVPGNLIISARSGSHSFDA SQMNMSHVISHLSFGMKFSARQMDDAKRLMPYIGRSHDRLNGRTFINERDIGANVTIEHYLQVVKTEVVTRRRSREHKIIEEYEYTAHSSLAQSVDIPVA KFHFELSPMQVLITEIPKSFSHFITNVCAIIGGIFTVAGILDSILHNTLRLVKKVELGKNF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	0	1
AT1G62330			O-fucosyltransferase family pr...		Lus10015558 [exp]	2.4	0.7220
AT3G50860			Clathrin adaptor complex small...		Lus10041742 [exp]	4.1	0.7230
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10017137 [exp]	4.5	0.7074
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021977 [exp]	6.7	0.7050
AT2G23690			unknown protein		Lus10016785 [exp]	8.9	0.6740
AT1G04900			Protein of unknown function (D...		Lus10016677 [exp]	9.8	0.6842
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	10.8	0.6660
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10041234 [exp]	11.5	0.7120
AT5G58200			Calcineurin-like metallo-phosp...		Lus10016863 [exp]	14.7	0.6438
AT2G34930			disease resistance family prot...		Lus10002753 [exp]	18.5	0.6041

Compare expression of checked genes

Lus10040029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.