Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58040 321 / 2e-92 FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIPS5, ATFIP1[V], FIP1[V], A homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) AT3G66652 70 / 9e-12 fip1 motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019610 [exp] 1153 / 0 AT5G58040 412 / 6e-127 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10019609 [exp] 459 / 4e-152 AT5G58040 206 / 2e-58 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10016905 [exp] 67 / 7e-11 AT3G66652 90 / 6e-18 fip1 motif-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G110100 [exp] 845 / 0 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Potri.006G187400 [exp] 793 / 0 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Potri.010G145150 [exp] 97 / 5e-20 AT5G58040 107 / 4e-23 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05182 [flax] [poplar] Fip1 Fip1 motif
Representative CDS sequence Show only first row Show all	>Lus10040030 pacid=23173403 polypeptide=Lus10040030 locus=Lus10040030.g ID=Lus10040030.BGIv1.0 annot-version=v1.0 ATGGAAGAGTGGGAGGAGGAAGACAGTGACAGTGAAGACGATTTGCAGATTGTGTTGAACGATACCAGTCATGGGCCGATGGAGATGGAAAGAGGAACGA TGATGGGAGAAGACGACGATGAAGATGGTGAGCCTTTGGTGATTGTGGCAGATGGGGACCCGAACCAACCTATGGAGGAGCCGGACTGGGGCGGCGGAGA CGAATCGGCAGGAGGTGCTTGGGGAACTGCTGGAGGAGAAGGGGAGAAGAAGGAAGGTGGAGAAGCTGGTGCTGGGAAAGGAAATGCTGTGGTGGCGGAC AAAATGGGGTATCCTCCTAATCATGGATATCACCAATCCTTTCATTCCCAGTTTAAGTATGTTAGGCCAGGTGCAGCACCAATGCCAGGTGCTGCCACAG GTCCTCCTGGAGCACCAGGTCAGGTCCGGCCTCCTATCAACTTAGTCTCTATGCCGGGTAGTGGTAGAGGTGATTGGCGCCCAATGGGTAATAAGAATGG CCCTCCGATGCAAAAGGGTTTTCCAGGTTATGGAATGTCTGGACGGGGCAACGGTATGGGTGGGCGTGGCTTTGGTGGAGGACTGGAATTCACCCTACCT TCTCACAAGACCATATTCGAGGTTGATATTGAAAACTTTGAGGAAAAGCCTTGGAAATATCCTGGTGTTGACATCACAGACTTCTTCAACTTTGGTTTAA ACGAGGAAAGTTGGAAAGATTTTTGCAGACAGCTTGAACAGCATCGACTAGAGACTACCATGCAAAGCAAAATCCGGGTTTATGAAAGTGGAAGGGCAGA GCAGGAATTTGATCCAGACTTGCCCCCAGAATTAGCAGCAGCCACTGGCGGCCATGGTGTTTCTGCTGACAATTCTAGTATTGGGAAGTCAGATTTTGGC CAAAGCGATTCGGCAAAAGGATCTGCTCGTGCCCGGCCTCCAATACCAACCGGTAGACCGATACCAGTAGAAACTGGTTTTAGTGACCGTCCACCTTCCA TCGACACTAGGCCACCTCGATTTCGCGATCCGGGACCGGATGTAATCATAGAGATTCCCCTGCAGCGATCACCAGAAGATGATTCTACCACAGAAAATGA TGTTGGTGACACGGAGAACGATGATCTTACAAACAGTGACATTAGAAGTAGTTGTGTGCCTGAAGATGAGGTCACACCACCGAAAGCTGAATGCTATGAC GGCCGCTTGAATACTTATCCCAACAAAAAGGGCGGCAGAAAGGCCCCGTATGTTGGTAAGGACCTTGATGGAGGTCGGCCTCCAGCCTCTCTTCACGACT TTCCAAGTAGATATCGTTCCAGTTCAAGGGGCCAGGCTCCCTTAAAACCTGATTTAGATTTACGTGCTTCTCATGAGGAAAGGCGGAAATTAAGGACGAA TGAGAGGTCTCCAAGTAGAAGTTTTCAGGACGCAGAGGAAGAATCAGCTGAAAGCATGGATGGCAGACGTAGTCGCCATCATTTATCGTCTCCCATCAAA GACACGAATGATGCCATAGAATCAAGTGTTAATGACAAGGATAATGTTGATGCCGAAGACTTTTTACCCGGTGAAGGAAGCAAAGATGGAACAAATGAAG ATGATAGTGCCCGAAATGACATTGTTAAAGATGGAGACACTTACCGTACAAAAAAGAAACCAAAAGTGAGTTCCTCTACTGATCTGCCACTCCGGGAAAT TGACAATGGGGATGACTCAAAAGCTGCCAGAAGCAGTGAAGACAGTAAAGCAAGATCAGGTAGTAGCAGAGATTATCAGAAATGGCAGGACGGGGTTGAT GAGGAAGTTGTTCAAGGTGGGCGATCTACGCTCTCTGGCAGTCTCAAGAGGCACCCTGATGACAGTGAACATAATTCACGTAGAAAAGACGTTGATTTGA GACAAGAGACAGAAAGAAGTCACATGTTAAGTAAAGGCAGAGAAGGGTCTTATAATCGCAGAGACTTAGATTCTAAGTCAGCCCATCACTTGCAATTAAA AAGTGAGGGTTATGATCGGAGGAAGGACCATGATAATGCTGATGGACCTTGGCAACGGAGAGATGAAGACCCATATAGCAGGAAGACTAGAATTGAAGAG ATAAAGAAGAAAGAAAATGGAGATGAAATGGGATCCAGGCATAGAAAGGTTCGAGAGAGTGAAAAGAATGATAAGGATGAACATGTGCATCCCAAGAAAC AATTGGAAAATGGTAGCTACAGGGTTCATTATGAGAAGGATGGCAGCACTAGGCACAGGGAAAGAGAAGACAGCGTGAAGCATAGATACGAAATTGTGGA CGATTACCATAGCAAACGAAGGAAGGATGAGGAATACCTAAGGAGGGAGTTTGCTGACAAGGAAGAGATGCTGCATAGCCACAGGGAAAGCTCGAGCCGC AGAAGAGGAAGAGATGATGCGATTGACTTGCGGAAGAGAGATGATCAGCAAAGAATTAGAGACTCCCTGGACGATTATCATTCTGGTAGGCACAAGGATG AGGTGTGGCTGTCGCGAGAACGGAGTGATAGGCCAAGAGAAAGAGAAGAGTTATATAGACCAAAACAATCCCACGAAGAACATTTCTCAAAACGCGAGAG AGATGATGGACGTGGTTCTGCAAGGAGCGGTCGGGCAACTGATGATGAGAAAGCATGGATTGGTAATACTAGAGGTACTGATAAAGAGCACCAGCTTAAA GATTCTCTTCGAACTAGTGAACAGTCGAAGAAAAGGGATCGGGTAGACGATGCACGGGGAAACCAAGGTACTGGGAAGGAAAGAAGATCAAGGCAGGATA AGCCCAGTTCTAGAGCGGATCGTGCTGTTGATACTCCCAATAACCAAAAATCACAGGACAAAAAACATAAAGAAAGCACGAGGAAGCTCAAGGAACCTGA GAGTGCAGATCACAGCACATTGGGCTCACTGAAAAGCCGAGAAGACAAGACTGGTCAATCTGAGAACTTGGAGGCAAAAGACATCAGCAAGCAACGGAAT GATAGCAATCAAAATGCAGCGCCACAACGCAACTCATCTAAAAGAGCTAAAGAAGATGCCTTGTCTGATGAGGAACAGCATGATTCAAAAAAAGGCCGCT CAAAATTCGAGCGCTGGCCAAGCCCGCAGGAGAGAGAACGCACCATGAACTATCAGGCAGCACCATATGCGATGATCGTCATCTAG
AA sequence Show only first row Show all	>Lus10040030 pacid=23173403 polypeptide=Lus10040030 locus=Lus10040030.g ID=Lus10040030.BGIv1.0 annot-version=v1.0 MEEWEEEDSDSEDDLQIVLNDTSHGPMEMERGTMMGEDDDEDGEPLVIVADGDPNQPMEEPDWGGGDESAGGAWGTAGGEGEKKEGGEAGAGKGNAVVAD KMGYPPNHGYHQSFHSQFKYVRPGAAPMPGAATGPPGAPGQVRPPINLVSMPGSGRGDWRPMGNKNGPPMQKGFPGYGMSGRGNGMGGRGFGGGLEFTLP SHKTIFEVDIENFEEKPWKYPGVDITDFFNFGLNEESWKDFCRQLEQHRLETTMQSKIRVYESGRAEQEFDPDLPPELAAATGGHGVSADNSSIGKSDFG QSDSAKGSARARPPIPTGRPIPVETGFSDRPPSIDTRPPRFRDPGPDVIIEIPLQRSPEDDSTTENDVGDTENDDLTNSDIRSSCVPEDEVTPPKAECYD GRLNTYPNKKGGRKAPYVGKDLDGGRPPASLHDFPSRYRSSSRGQAPLKPDLDLRASHEERRKLRTNERSPSRSFQDAEEESAESMDGRRSRHHLSSPIK DTNDAIESSVNDKDNVDAEDFLPGEGSKDGTNEDDSARNDIVKDGDTYRTKKKPKVSSSTDLPLREIDNGDDSKAARSSEDSKARSGSSRDYQKWQDGVD EEVVQGGRSTLSGSLKRHPDDSEHNSRRKDVDLRQETERSHMLSKGREGSYNRRDLDSKSAHHLQLKSEGYDRRKDHDNADGPWQRRDEDPYSRKTRIEE IKKKENGDEMGSRHRKVRESEKNDKDEHVHPKKQLENGSYRVHYEKDGSTRHREREDSVKHRYEIVDDYHSKRRKDEEYLRREFADKEEMLHSHRESSSR RRGRDDAIDLRKRDDQQRIRDSLDDYHSGRHKDEVWLSRERSDRPREREELYRPKQSHEEHFSKRERDDGRGSARSGRATDDEKAWIGNTRGTDKEHQLK DSLRTSEQSKKRDRVDDARGNQGTGKERRSRQDKPSSRADRAVDTPNNQKSQDKKHKESTRKLKEPESADHSTLGSLKSREDKTGQSENLEAKDISKQRN DSNQNAAPQRNSSKRAKEDALSDEEQHDSKKGRSKFERWPSPQERERTMNYQAAPYAMIVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040030 [exp]	0	1
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10031361 [exp]	9.0	0.8667
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	11.7	0.8434
AT3G13670			Protein kinase family protein ...		Lus10013737 [exp]	11.8	0.7801
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10003604 [exp]	24.0	0.7949
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	24.4	0.7889
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10005677 [exp]	28.1	0.8111
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	30.3	0.7982
AT1G32420			F-box and associated interacti...		Lus10016866 [exp]	35.7	0.8162
AT1G04300			TRAF-like superfamily protein ...		Lus10022208 [exp]	36.5	0.8290
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	39.6	0.8246

Compare expression of checked genes

Lus10040030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.