Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56110 232 / 8e-72 NOP56 homolog of nucleolar protein NOP56 (.1) AT3G12860 225 / 2e-69 NOP56-like pre RNA processing ribonucleoprotein (.1) AT3G05060 96 / 2e-21 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27120 91 / 7e-20 NOP56-like pre RNA processing ribonucleoprotein (.1) AT4G16143 65 / 3e-11 IMPA-2 importin alpha isoform 2 (.1.2) AT5G27140 64 / 5e-11 NOP56-like pre RNA processing ribonucleoprotein (.1) AT4G02150 61 / 5e-10 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT3G05720 59 / 2e-09 IMPA-7 importin alpha isoform 7 (.1) AT1G09270 55 / 5e-08 IMPA-4 importin alpha isoform 4 (.1.2.3) AT3G06720 54 / 5e-08 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017214 [exp] 256 / 5e-81 AT1G56110 783 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10021096 [exp] 256 / 6e-81 AT1G56110 782 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10004143 [exp] 102 / 9e-24 AT5G27120 730 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10001716 [exp] 102 / 1e-23 AT5G27120 722 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10033846 [exp] 95 / 3e-21 AT5G27120 758 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10018995 [exp] 95 / 4e-21 AT5G27120 734 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10037722 [exp] 62 / 3e-10 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10016850 [exp] 62 / 3e-10 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10010933 [exp] 61 / 4e-10 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095400 [exp] 243 / 6e-76 AT1G56110 761 / 0.0 homolog of nucleolar protein NOP56 (.1) Potri.015G092900 [exp] 235 / 9e-73 AT3G12860 761 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.005G045600 [exp] 95 / 2e-21 AT5G27120 768 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.013G032300 [exp] 92 / 2e-20 AT3G05060 737 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.010G001400 [exp] 64 / 4e-11 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.005G020400 [exp] 64 / 5e-11 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G010900 [exp] 64 / 5e-11 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.008G214100 [exp] 63 / 1e-10 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.002G199600 [exp] 61 / 5e-10 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.014G124200 [exp] 61 / 6e-10 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10040032 pacid=23173563 polypeptide=Lus10040032 locus=Lus10040032.g ID=Lus10040032.BGIv1.0 annot-version=v1.0 ATGGGTCCTCAAGTGAAGAAATTCGGAGCTGGTGTTGTTCCTCGCTCTGTGGAGTTTCACGTTGGGGAGGATTTCCCTCAGCTTTCGTTTGAAGTTGTTT GGGCTGTCACCAATATTCCGCCTGGTACCTATCAGAATACCCAAACTGTGATTGAAGCTGGTGTCTGTAGTAAAATTGTTCAGTTTAGATCACCAAGGTT TGGGTTTTGTGTTGGATTCAAAGGAGGCGGTTGTGTGGGGTTTAGGTTATGGACTGATAAGATACTGATATGTTTCAATGAGTTTAATGTTTTTGTCCCT AATGGATGGGATGAACTTGAGTTTACTGAACTGTCCAGGAATCTTGGAGGGGAGGTAGATATTGTTGAGGATGCAAAATACAGGGCGGTGACAGTCAAAA GGGCTGATATAATTACAGATTATTCTCGTGTTGTTGTGGGTGAGCTGTTTGTTTGGTGTAACTCTACCTCAAGGGTTGTGACTGATGAGCTAAGGAACTT CTTAGAGCTTAATCTCCCTAAAGTAAAAGCAGGGAAGAAGCCCAATTTTAGTTTGGGTGTCTCTGAGCCTAAAGTTGGGTCAAATTGTAATGAATTTGTT CTTGAGCTACTCCGAGATGCCCACCTACATTTTGACCACTTCATCACAAATCTAAAGCCTGGAGATTGGGAGAGAGGTCAGCTCGATCTTGGTCACAGCT ATAGTCGAGCAAAAGTCAAGTTCCATGTGAACAGAGTTGACAATATGGTCATCCAAGCAATATTTGTTCTTCATATTCTGGATAAAAAGGTGAATTCATT ACCTATGGAACTTAGAAAGTGGTACTGGTGGCATTTATCTGAAATGGTGCAAATTGTCAATGACAATTATCTCTATGCAAAGCTTGCTGAGTTCATTGAG GACATGTCGAAGTTATTTGAAGACAAGCTCTCTAATTTGACCGAGATTCTTGGTGTTGACGATAATTTTGCCTACACTTTAACTGCTGGGTTTTTCTACA CATTGACGATTGATTCTAGGCGATGTTAA
AA sequence Show only first row Show all	>Lus10040032 pacid=23173563 polypeptide=Lus10040032 locus=Lus10040032.g ID=Lus10040032.BGIv1.0 annot-version=v1.0 MGPQVKKFGAGVVPRSVEFHVGEDFPQLSFEVVWAVTNIPPGTYQNTQTVIEAGVCSKIVQFRSPRFGFCVGFKGGGCVGFRLWTDKILICFNEFNVFVP NGWDELEFTELSRNLGGEVDIVEDAKYRAVTVKRADIITDYSRVVVGELFVWCNSTSRVVTDELRNFLELNLPKVKAGKKPNFSLGVSEPKVGSNCNEFV LELLRDAHLHFDHFITNLKPGDWERGQLDLGHSYSRAKVKFHVNRVDNMVIQAIFVLHILDKKVNSLPMELRKWYWWHLSEMVQIVNDNYLYAKLAEFIE DMSKLFEDKLSNLTEILGVDDNFAYTLTAGFFYTLTIDSRRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10040032 [exp]	0	1
AT4G25670			unknown protein		Lus10014961 [exp]	2.6	0.9222
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10033702 [exp]	4.9	0.8939
AT5G17190			unknown protein		Lus10031957 [exp]	6.9	0.8596
AT4G20880			ethylene-responsive nuclear pr...		Lus10023347 [exp]	7.3	0.8918
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10016616 [exp]	7.5	0.8911
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037682 [exp]	12.0	0.8627
AT1G72180			Leucine-rich receptor-like pro...		Lus10003503 [exp]	13.7	0.8770
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	20.3	0.8481
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10007457 [exp]	21.1	0.8348
AT4G32750			unknown protein		Lus10022138 [exp]	22.9	0.8808

Compare expression of checked genes

Lus10040032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.