Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30993 66 / 1e-12 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022968 [exp] 57 / 6e-09 AT1G10790 214 / 8e-63 unknown protein Lus10007927 [exp] 54 / 2e-08 ND / Lus10037813 [exp] 41 / 5e-05 ND / Lus10039910 [exp] 0 / 1 ND / Lus10005309 [exp] 0 / 1 ND / Lus10008734 [exp] 0 / 1 ND / Lus10039394 [exp] 0 / 1 ND / Lus10035488 [exp] 0 / 1 ND / Lus10031074 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187500 [exp] 117 / 2e-31 AT4G30993 177 / 5e-54 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.018G110300 [exp] 94 / 2e-22 AT4G30993 200 / 9e-63 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040035 pacid=23173483 polypeptide=Lus10040035 locus=Lus10040035.g ID=Lus10040035.BGIv1.0 annot-version=v1.0 ATGAAAATTGGAGAAACACCGGAGGCAGGGGGTGTGACGTACCCAGTGTGCAACGGAGACCACTGGGTGCACTTATATTTGGATGTGCGTGATGGGGTAC CCAATTCCAGCAGTGAGTCGAATGTGGCATTTTTGGACCGACGACAGTGCGAAAGCGGCCTGGTTAGGCACACTGTACCGTCGGGAGCATGCAACCACCC ATTGCCCCGTCATGATATTTTCTTCATAACCGTCCGAGGTGGCTTCAGACCTGTTAATACGCAGAGATATCTTCTCAAACAGATCGAGCATGTTTCAAGG AATTACGGAGTTAAGTTTGTGGTGAATATAAGTGAGCTTGGCGAAATAGAAGATCCCCTCACTCGTAATGATCTAGAGCTTAAGGGATCAGTTAATGGCT CAGACTTGTCTACAACGCTAGAAACTGCAACTGGTAACTGGTTTATAGTCGTTGGATATCATCCAGTCATACATTGTGACGAAAATGATGAACAAGTCGA GTCCAACAGTGTCCTGCATCATATCTTTGTGAAGCATGGAGTGAGTGCTTACCTCAGCACCAATGGCCCCTGCTCGAAACAGAAACACACCTCTCGAGAC GGTGTGGACTACATTGGAATCCTAGGCCCTCCTGATCACATAGAAGAAGCTTCCTTCTCTGCTTCAAACAGGAAACTGGCTTTGCCTTCGGATTTGCGAC AGCAAAATCACAAGTATGGAATTCTCTCGTCCTTCAATTGA
AA sequence Show only first row Show all	>Lus10040035 pacid=23173483 polypeptide=Lus10040035 locus=Lus10040035.g ID=Lus10040035.BGIv1.0 annot-version=v1.0 MKIGETPEAGGVTYPVCNGDHWVHLYLDVRDGVPNSSSESNVAFLDRRQCESGLVRHTVPSGACNHPLPRHDIFFITVRGGFRPVNTQRYLLKQIEHVSR NYGVKFVVNISELGEIEDPLTRNDLELKGSVNGSDLSTTLETATGNWFIVVGYHPVIHCDENDEQVESNSVLHHIFVKHGVSAYLSTNGPCSKQKHTSRD GVDYIGILGPPDHIEEASFSASNRKLALPSDLRQQNHKYGILSSFN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30993			Calcineurin-like metallo-phosp...		Lus10040035 [exp]	0	1
AT5G11600			unknown protein		Lus10002800 [exp]	1.0	0.8528
AT4G29330		DER1	DERLIN-1 (.1)		Lus10034990 [exp]	1.4	0.8129
AT4G36640			Sec14p-like phosphatidylinosit...		Lus10023956 [exp]	2.0	0.7950
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	7.1	0.7630
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10035965 [exp]	9.2	0.7909
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	11.0	0.7413
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10023253 [exp]	16.4	0.7501
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	20.3	0.7956
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10001184 [exp]	28.0	0.7528
AT5G26670			Pectinacetylesterase family pr...		Lus10000253 [exp]	28.5	0.7818

Compare expression of checked genes

Lus10040035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.