Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58170 519 / 9e-177 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 516 / 1e-175 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT4G26690 387 / 1e-125 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT1G66970 378 / 7e-122 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT5G55480 376 / 5e-121 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66980 369 / 3e-115 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 317 / 1e-98 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT1G74210 71 / 6e-13 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) AT5G08030 57 / 2e-08 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019605 [exp] 622 / 0 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10019606 [exp] 605 / 0 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 587 / 0 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10032576 [exp] 394 / 4e-128 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10014903 [exp] 385 / 2e-124 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10031604 [exp] 374 / 2e-120 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 370 / 4e-119 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10016584 [exp] 360 / 4e-115 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10043171 [exp] 339 / 2e-108 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187600 [exp] 603 / 0 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.018G110600 [exp] 590 / 0 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.001G360700 [exp] 397 / 4e-129 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360800 [exp] 387 / 3e-125 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.015G058400 [exp] 51 / 2e-06 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10040036 pacid=23173541 polypeptide=Lus10040036 locus=Lus10040036.g ID=Lus10040036.BGIv1.0 annot-version=v1.0 ATGGATAGCGTTGGAATCTGCAGGCCAGATGTTGAGATCAGTAACTCGACTACCATAGAGATGCTCTTCCCCAACGAAACAAAAACGTACAAGGTTAATG GACAAGATGTCACGGGTTATTTCAGTATCGATTACACCATTCTCCAACTCAGCAATGCCACAGCAATTCAGAACGTATTGAAACGAACAGAAATTTTTGA CCTTGTCCCGATCCCAACCATTGATGATGTCCGTTTGGGTGCCCCGGCTTCAATGTGGGTGAATGTTAAGTATGCCCAATTTTACGAGGAACACAAGCGG AGCATGGAGGATTACTTTGACAAATTGGGCCTGCGTGGCATCAATTACTTATCCTCTCCTGAGATCGGTTTCTTGAAGGCAATGAGTGCTAAAAAACCAC CAAGCATGAAGCTGTTTTTTGTCTTCCGCAGCAAAGATGCAGTTGAACCCACAACCAACAAGACTTACGGATCAATCTCATCGAATCTAGCAGCACTCAA GCCTATGGTAGCTGGAATTGTTGTCCCGAAGGACTATAACTACAGTTATGATCCAACAGAAGAATATCTGAATTTTATCCGCAATGGCCAGTTCTCTGTT GATGGCTTCGTTACAGATTTCCCACCTACAGCAATGGACGCAGTTGAATGTTTTGCAAGCTTCAACAGCACCCAGGACAGAGCAGGGCGCCCTTTGATCA TTACACGTGGTGGAGCAAGTGGAGTCTATGCAGGGAGCAGTGATCTTGCTTACCAGAAAGCAGTAGATGATGAGGCAGACATAATTGATTGCAGGGTTCA AATGTCTAAGGATGGAGTTGCTTTCTGTATGGCTTCGCCAGATCTCACTGAAGATACGACTGCAGCAACTGTTTTCATTGATAAGGCAACCACCATTCAT GAAATCCAAAAAGCATCTGGAATATTTTCTTTCGATTTGTCATGGAGTGACATTCAAACCTTGCAACGTAAACACATTCATCAATGGCTTTACCTATGTC TTCCTGCTTTACATCTTTCTTACCGGGCTTCCTCGTCACTCATTTGCATCTCACAGTGTGGTGGTTTCTTGTTTTCAGCTCGATTGTCAAGTCCTTTTGA GAAAGGCAGTGGTCTTAAGAGAAACCCTGCAGTTGTGAACAAGGGCAAGTTCGTAAAGCTCGACAAATTTCTGGAGTTTGCCAAGTCGGAATCTGTTCCC GGTATTCTGATCAGCTTAGAGCTGTTACCATGGCCTTCGATCAAATTGATTTTAAAGCTCAAACCCACCATCAACCACATGCAGAATGTTGCATACCTAG CATCAAAGAAAGGTCTTGACGTTGTTAACACTGTCAGCACATCACTAAGTAAGGCCTCATTCGACAAGCAGTCCACTCAAAAAGTTTTTATAGAATCAGA GGACACATCAGTGCTAGATAAGTTCAAGAATGTGGGCGGATACAAAAGGGTTCTCATGGTCAAGGAAGAAATAAGCGATATACCCAAGGCTACAGCAAAG GAAATCAAGAAGTATGCGGATGCAGTCACCTTGACAAGATACTCAATCATTCCAACTAACGAAGGATTCACACTCAATTACACAGATGCAGTGCAGTCAC TGCAAAGTGAAAACCTGTCTGTGTTCGTCTCCACCCTTTACAATGAATATATCACACTTGCATTTGACTACTTTGCAGACCCCATAGTTGAGATCTCTAC TTATTTCCATCAAATTGGAGTCAATGGAACCATAACAGAATACCCGAGAACTGCAAGCAAATATATGAGTAAGCATTCAATGCAAAAGCTTCTTCCATTT CTCAGAGAGAAGACAAATTAG
AA sequence Show only first row Show all	>Lus10040036 pacid=23173541 polypeptide=Lus10040036 locus=Lus10040036.g ID=Lus10040036.BGIv1.0 annot-version=v1.0 MDSVGICRPDVEISNSTTIEMLFPNETKTYKVNGQDVTGYFSIDYTILQLSNATAIQNVLKRTEIFDLVPIPTIDDVRLGAPASMWVNVKYAQFYEEHKR SMEDYFDKLGLRGINYLSSPEIGFLKAMSAKKPPSMKLFFVFRSKDAVEPTTNKTYGSISSNLAALKPMVAGIVVPKDYNYSYDPTEEYLNFIRNGQFSV DGFVTDFPPTAMDAVECFASFNSTQDRAGRPLIITRGGASGVYAGSSDLAYQKAVDDEADIIDCRVQMSKDGVAFCMASPDLTEDTTAATVFIDKATTIH EIQKASGIFSFDLSWSDIQTLQRKHIHQWLYLCLPALHLSYRASSSLICISQCGGFLFSARLSSPFEKGSGLKRNPAVVNKGKFVKLDKFLEFAKSESVP GILISLELLPWPSIKLILKLKPTINHMQNVAYLASKKGLDVVNTVSTSLSKASFDKQSTQKVFIESEDTSVLDKFKNVGGYKRVLMVKEEISDIPKATAK EIKKYADAVTLTRYSIIPTNEGFTLNYTDAVQSLQSENLSVFVSTLYNEYITLAFDYFADPIVEISTYFHQIGVNGTITEYPRTASKYMSKHSMQKLLPF LREKTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	0	1
AT2G31420	B3		Domain of unknown function (DU...		Lus10039058 [exp]	1.0	0.9005
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	1.4	0.8932
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	2.2	0.8834
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	2.4	0.8806
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	6.0	0.8853
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Lus10017388 [exp]	6.6	0.8353
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	8.5	0.8609
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	8.5	0.8862
					Lus10022880 [exp]	12.3	0.8381
AT2G34930			disease resistance family prot...		Lus10001035 [exp]	12.4	0.8799

Compare expression of checked genes

Lus10040036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.