Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58170 560 / 0 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 556 / 0 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT4G26690 397 / 1e-126 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT5G55480 387 / 6e-123 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66970 380 / 3e-120 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT1G66980 382 / 1e-117 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 343 / 8e-107 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT5G08030 93 / 5e-20 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1) AT1G74210 91 / 3e-19 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019605 [exp] 1191 / 0 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040036 [exp] 587 / 0 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10019606 [exp] 431 / 5e-141 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10031604 [exp] 405 / 9e-130 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10014903 [exp] 401 / 5e-128 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10032576 [exp] 399 / 2e-127 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10016584 [exp] 385 / 2e-122 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 336 / 5e-104 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10043171 [exp] 308 / 2e-94 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187600 [exp] 632 / 0 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.018G110600 [exp] 622 / 0 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.001G360700 [exp] 399 / 8e-128 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360800 [exp] 398 / 3e-127 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.015G058400 [exp] 77 / 1e-14 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10040037 pacid=23173428 polypeptide=Lus10040037 locus=Lus10040037.g ID=Lus10040037.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGTGACCCCAACGGCACATGGCATACTTTGAAAGGTTTGCAGCCGAAGGTGGTGGCTCGAGAAGGGTTTTCGGGGCTATTCCCAGAATCGA CTTCTATCTCTTACGATCAAATGGCATTCGATGGGTTGATTACGCTTTGCAATCTACAGTTAACAATGGACGGTAACGGAATTTGTCAGTCGGATATTGA GATCAGTAGATCGACCAACATACAAAATATCTATCCCAACAAAAAAAAGACTTACAATATCAACGGACAAAAGGTTACTGGCTATTTCACCATTGATTAC ACTATGCAGCAGCTCATGGAAGAAGTTTCAGCAATGCAGAGCATCTGGACTCGACCTGACTTCTTCGATGGCTATCCTCTCCTGCCCTTTGACGACAAAC AAAGTGGCGCACGAGCCATACCTCTCTTGTGGGTCAATGTTCCGTACGTACAATTCTACACAGAGCACAAGCTGAACATTCAAGAATACATCAACCATGT TGGCCTCAACGGCATCACATGCCTATCCTCTCCAGAAATCGGGTTCCTAAAAGCAATAAGTGCGAAAAAGCCCAAAACCTTAAACCTCTACTTGGTCTTC CATGACAAAGATGCAATTGAACCCACCACAAAACAGAGCTACGGCTCCATCTTGTCGAATCTGGGATCGCTGAAGCCGATTGTAACAGGGATTGTTGTTC CTAAGGAATACATTTGGCCCATGGAGGAATCGAATTACCTGGCAGCGAATCCCACTAGTTTGGTGGCTGATGCCCATAAGCTAGAGTGTTTTGCCAAGTT GGGAGAGACGAGGGCGAGAAATGGTTCATCAGCGAGACCATTGGTGATAACTAAGGGAGGAGCAAGTGGGATATACGCAGCAAGCAGTGATCTTGCGTAT AAGAAGGCTGTAGAAGACGGCGCGGACGTGATCGATTGCAGCATTCAAATGTCAAAAGACGGAGTTGCTTTCTGTATGGGCTCTCCAGACTTGACTCAGG ATACTACAGCTGCTTCCATTTTCTTGGATCAATCCACCACCATCTCCGAAATCCAACGCCAGGCTGGAATCTTCTCTTTCGAGCTTACTTGGACCGACAT TCAGTCCTTGCAACCTCAATTATCGACTCCTTTTGAGAAGAAGACGGGACTGAAGAGGAATCCAGCCTTTAGAAACAAAGGCAAATTTGTCACCTTGTCT GAATTTTTAGAGTTTGCCAATGCCAATAACGTAACCGGTGTTCTCATAAACATAAATAATGCAGCATATTTAGCATCAAAGAAGGGCCTTGACCTGGTGG GAACGGTGAGTGCCGCACTAAAAAAGGCTCAATTCGACCAGCAGAGCGAGAGACTACTGTTTATCCAATCGGACGACACCTCAGTGTTATCGAAATTCAA AAACTTTGGGTCGAATTTAACAAGGGTGTTGACAATTACAGAAGAAGTGAGCGACGTCCCAAAGGAGACTGCCAATGAGATCAAGAAGTACGCTGATGCG GTTGCCTTGAACCGATACTCAATCATCACAACCAACGCCCAAGGGATGACCATGGACAAGACCAAAACCGTCGACTCGTTGCATGCTGCCAACCTGGATG CCTTTGTCTACACCCTTGTTAACGAGTACTATTCTCTTGCTTTCGATTACTACTCTGATCCCACTCTCGAGATCGCCACCTTTGCTCACACCATTGGCGT TGATGCCATCTTCACTGAGTTCCCGGGGACTGCCACCATGTATTTAAGGAACCCATGCTCGGATTTGAACGATGTGAACCGTAACTACACAATCGTACCA ATCGAGCCAGGAACACTTGCTAAGGCAGCTCCAATAGCTCCAGAGGCAGAAGCTCCACGACCAGCGTTAGCCGATAAAGATGTGACTGATCCACCTCTTC CGAAAGTTATTAGCAAATCTCCCCCAGCTCCGGCAGCTGCTGCACCACCTAAAGCTTCTTCTGCCACCAACAAGGTCGGCGAACTTCATTACTCTACAAC TATTGCTGTGGTCTTGCTCGCTGCCGGGCGATTTTTTTCAGAGTTTTTAGGGTTCGCGATGCCAAAGACGGCCTCGCCGGGCCGTCTTCCGCTGCTACCT AAGCCTCTGGATTCCCGCAGTGGGACTAGGCGCACAACGCAAGCCTCATCGTCCCCGTCCGGAAAAGGGGATCGTGACACTGAACATGCCAAGAAAAAGG TTAAGGCAATGGAGCTACCTCGATATGAGGAAACTTTTGACGTCAAAATTGAGGACATCACTCGTGAGGAAACCGCCAATGAGAAGACTAAGGATGATGT TCCATTACATGATTCCCATACCATGCATTACGTGTGGTCTCAACGACCTAATAAGCTATTTGAGGAGACTTCTTGA
AA sequence Show only first row Show all	>Lus10040037 pacid=23173428 polypeptide=Lus10040037 locus=Lus10040037.g ID=Lus10040037.BGIv1.0 annot-version=v1.0 MAAGDPNGTWHTLKGLQPKVVAREGFSGLFPESTSISYDQMAFDGLITLCNLQLTMDGNGICQSDIEISRSTNIQNIYPNKKKTYNINGQKVTGYFTIDY TMQQLMEEVSAMQSIWTRPDFFDGYPLLPFDDKQSGARAIPLLWVNVPYVQFYTEHKLNIQEYINHVGLNGITCLSSPEIGFLKAISAKKPKTLNLYLVF HDKDAIEPTTKQSYGSILSNLGSLKPIVTGIVVPKEYIWPMEESNYLAANPTSLVADAHKLECFAKLGETRARNGSSARPLVITKGGASGIYAASSDLAY KKAVEDGADVIDCSIQMSKDGVAFCMGSPDLTQDTTAASIFLDQSTTISEIQRQAGIFSFELTWTDIQSLQPQLSTPFEKKTGLKRNPAFRNKGKFVTLS EFLEFANANNVTGVLININNAAYLASKKGLDLVGTVSAALKKAQFDQQSERLLFIQSDDTSVLSKFKNFGSNLTRVLTITEEVSDVPKETANEIKKYADA VALNRYSIITTNAQGMTMDKTKTVDSLHAANLDAFVYTLVNEYYSLAFDYYSDPTLEIATFAHTIGVDAIFTEFPGTATMYLRNPCSDLNDVNRNYTIVP IEPGTLAKAAPIAPEAEAPRPALADKDVTDPPLPKVISKSPPAPAAAAPPKASSATNKVGELHYSTTIAVVLLAAGRFFSEFLGFAMPKTASPGRLPLLP KPLDSRSGTRRTTQASSSPSGKGDRDTEHAKKKVKAMELPRYEETFDVKIEDITREETANEKTKDDVPLHDSHTMHYVWSQRPNKLFEETS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10040037 [exp]	0	1
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	2.4	0.9333
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10036719 [exp]	4.0	0.9024
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012479 [exp]	5.2	0.9145
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	5.8	0.9190
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034036 [exp]	7.3	0.8951
AT1G13340			Regulator of Vps4 activity in ...		Lus10017591 [exp]	9.6	0.8166
					Lus10015230 [exp]	10.2	0.8989
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10020243 [exp]	11.0	0.8030
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10040906 [exp]	11.6	0.8554
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	12.0	0.8761

Compare expression of checked genes

Lus10040037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.