Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31020 435 / 3e-155 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 414 / 8e-147 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14390 329 / 4e-112 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 325 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 320 / 3e-110 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 323 / 5e-110 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 317 / 1e-107 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 293 / 1e-97 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13610 274 / 8e-91 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019604 [exp] 550 / 0 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 329 / 6e-112 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 327 / 4e-111 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017617 [exp] 311 / 2e-105 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10022307 [exp] 310 / 4e-104 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10033575 [exp] 306 / 2e-103 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10030951 [exp] 298 / 2e-99 AT1G32190 465 / 2e-163 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036842 [exp] 295 / 2e-98 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042075 [exp] 290 / 9e-97 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111400 [exp] 441 / 1e-157 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G188100 [exp] 441 / 1e-157 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G117633 [exp] 331 / 3e-113 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.001G340000 [exp] 331 / 7e-113 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G097300 [exp] 329 / 2e-112 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.015G087100 [exp] 324 / 3e-110 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 320 / 9e-109 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 317 / 3e-107 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G090800 [exp] 315 / 5e-107 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G112300 [exp] 316 / 7e-107 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10040038 pacid=23173458 polypeptide=Lus10040038 locus=Lus10040038.g ID=Lus10040038.BGIv1.0 annot-version=v1.0 ATGGGGAATGTGACGTCGAACGTCGCGGCGAAATTTGCCTTCTTCCCGCCGGACCCTCCGACGTACGACGTGCTTGAGGAGGAAGATGGGAGGCTGGTGG TGCCAGGAGTGACGGCGGACAAGAACATGGAGGTCCATACGTTGGACACTAAAGCTGGGAATAAAGTTGTGGCCATGTTCTGGAAACACCCTTGTGCCAG ATTCACCCTTCTATATTCACATGGCAATGCTGCCGACCTTGGCCAAATGCACGAGCTTTTCATTGAGCTAAGGGCTCATCTCAGGCTCAACATCATGAGC TATGACTATTCAGGCTATGGAGCATCTTCAGGAAAGCCATCTGAGGTGAACACATACTATGACATTGAGGCAGTGTACAAGTGCTTGAAGGATCAGTATG GAGTAAAGCAGGAGGATTTGATAGTGTACGGACAGTCGGTTGGAAGTGGTCCGACCCTCCATTTAGCCTCACGACTGCACAACTTGAGAGGTGTTGTCCT TCACAGTGCCATCCTTTCCGGTATCCGGGTTTTGTATCCTGTCAAGATGACCCTATGGTTCGACATCTTTAAGAATATAGACAAGATTCGACATGTCAAC TGTCCTGTTCTTGTCATTCATGGAACGAGCGACGAGATAGTTGATTTCTCGCACGGGAAGCGACTGTGGGAACTGGCAAAGGAAAAGTATGAGCCTTTGT GGGTGAAAGGTGGTGGGCATTGCAACCTGGAAACGTACCCTGAATACATAAAACACTTGAGGAAGTTTGTAAACGCCATGGAGAAGATGGCCATCTCCAA ACCACCAGCAAAGCAACCGCCCAATGGGGAATCGGCTATGGAATCCAACAAGCAGACCAAGTGCTTAATCTTTCCCTTGAAAAGCCGGAGCGAGTAA
AA sequence Show only first row Show all	>Lus10040038 pacid=23173458 polypeptide=Lus10040038 locus=Lus10040038.g ID=Lus10040038.BGIv1.0 annot-version=v1.0 MGNVTSNVAAKFAFFPPDPPTYDVLEEEDGRLVVPGVTADKNMEVHTLDTKAGNKVVAMFWKHPCARFTLLYSHGNAADLGQMHELFIELRAHLRLNIMS YDYSGYGASSGKPSEVNTYYDIEAVYKCLKDQYGVKQEDLIVYGQSVGSGPTLHLASRLHNLRGVVLHSAILSGIRVLYPVKMTLWFDIFKNIDKIRHVN CPVLVIHGTSDEIVDFSHGKRLWELAKEKYEPLWVKGGGHCNLETYPEYIKHLRKFVNAMEKMAISKPPAKQPPNGESAMESNKQTKCLIFPLKSRSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	0	1
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	1.4	0.8872
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	3.2	0.8673
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Lus10003034 [exp]	3.7	0.8155
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10029547 [exp]	5.8	0.8032
AT5G67390			unknown protein		Lus10011080 [exp]	6.0	0.8480
AT4G13020		MHK	Protein kinase superfamily pro...		Lus10003155 [exp]	6.7	0.8558
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	7.5	0.8638
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	11.3	0.8631
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10042143 [exp]	12.4	0.8237
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10015457 [exp]	12.8	0.8094

Compare expression of checked genes

Lus10040038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.