Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80750 250 / 1e-83 Ribosomal protein L30/L7 family protein (.1) AT2G01250 216 / 2e-70 Ribosomal protein L30/L7 family protein (.1.2) AT2G44120 215 / 5e-70 Ribosomal protein L30/L7 family protein (.1.2) AT3G13580 214 / 1e-69 Ribosomal protein L30/L7 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019603 [exp] 466 / 8e-169 AT1G80750 269 / 5e-91 Ribosomal protein L30/L7 family protein (.1) Lus10004220 [exp] 214 / 1e-69 AT2G44120 421 / 4e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10021296 [exp] 214 / 2e-69 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10016970 [exp] 214 / 2e-69 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10029423 [exp] 212 / 9e-69 AT2G44120 420 / 6e-151 Ribosomal protein L30/L7 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G180700 [exp] 350 / 5e-123 AT1G80750 280 / 1e-95 Ribosomal protein L30/L7 family protein (.1) Potri.001G047400 [exp] 347 / 6e-122 AT1G80750 285 / 2e-97 Ribosomal protein L30/L7 family protein (.1) Potri.006G073200 [exp] 210 / 5e-68 AT2G44120 363 / 2e-128 Ribosomal protein L30/L7 family protein (.1.2) Potri.008G008000 [exp] 208 / 3e-67 AT3G13580 410 / 7e-147 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.010G250900 [exp] 207 / 4e-67 AT3G13580 414 / 2e-148 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.018G140300 [exp] 207 / 5e-67 AT3G13580 359 / 8e-127 Ribosomal protein L30/L7 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00327 [flax] [poplar] Ribosomal_L30 Ribosomal protein L30p/L7e PF08079 [flax] [poplar] Ribosomal_L30_N Ribosomal L30 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040040 pacid=23173437 polypeptide=Lus10040040 locus=Lus10040040.g ID=Lus10040040.BGIv1.0 annot-version=v1.0 ATGGCGATGTCGGCGGAAGATGAGCAGAAGCCGTTGGCTTACATACCGGAGGTAGTGTTGAAGAAGAGGAAACACAAGGAAGAGTCAATAGCGCTTACGA GGAAGAATCAGCTGGAGTTGGGGGCTCATGGTCTCAAGAAGCGGAAGGTTCAGGACATCAAAAGGCCTGAGCAGTTTATCAAGGAGCACAGGGACAAGGA ATTGGACCTCATACGAATGAAGCAGAGAACTAAGAGACCAAAGTCTGCTAAATCTGTGTTGGCAAAGTCTAAGCTTTTATTCGTGGTTCGCATACAAGGG AAGAATGACGTCCACCCCAAAGTTAAGAAAATGCTTTACAAGATGAACCTGACTAAAGTGTTTGATGGTGTATTTATGAAGGCTAATGAAGGAGTGTTTG AGATGCTTCAGAGGGTGGAGCCATATGTTACCTTTGGGTATCCGAGTGTTAAAACCGTGACTGAGCTTATATACAAGAAAGGTAGTGGAAAAAAGGACAA TCAGAGAGTTGCACTGATTGATAATAACATCGTTGAACAGGCATTAGGGAAATATGGGATGCTGTGTTTGGAAGATATCGTGCATGAGATAACAAATGTT GGTCCACACTTTAAGGAGGTGAACTCCTTCTTGGGATCGTTTTCGCTGAACAAACCAAAACAAGGGCTGCAAGGCACGAAAGCACCGTACAAGGATGGCG GGGACACTGGAAATCGTGAGGAGAAGATTAATGAGCTGATCAGTAAGATGAATTGA
AA sequence Show only first row Show all	>Lus10040040 pacid=23173437 polypeptide=Lus10040040 locus=Lus10040040.g ID=Lus10040040.BGIv1.0 annot-version=v1.0 MAMSAEDEQKPLAYIPEVVLKKRKHKEESIALTRKNQLELGAHGLKKRKVQDIKRPEQFIKEHRDKELDLIRMKQRTKRPKSAKSVLAKSKLLFVVRIQG KNDVHPKVKKMLYKMNLTKVFDGVFMKANEGVFEMLQRVEPYVTFGYPSVKTVTELIYKKGSGKKDNQRVALIDNNIVEQALGKYGMLCLEDIVHEITNV GPHFKEVNSFLGSFSLNKPKQGLQGTKAPYKDGGDTGNREEKINELISKMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	0	1
AT1G25260			Ribosomal protein L10 family p...		Lus10043280 [exp]	1.0	0.9415
AT1G23280			MAK16 protein-related (.1)		Lus10000846 [exp]	1.4	0.9366
AT1G15420			unknown protein		Lus10030351 [exp]	2.8	0.9210
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	3.9	0.9341
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10019603 [exp]	4.1	0.9099
AT5G26800			unknown protein		Lus10015444 [exp]	5.7	0.9171
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10038695 [exp]	5.9	0.9252
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	6.3	0.9190
AT2G46230			PIN domain-like family protein...		Lus10010134 [exp]	8.8	0.9226
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10014676 [exp]	11.7	0.9265

Compare expression of checked genes

Lus10040040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.